View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12545_high_41 (Length: 240)

Name: NF12545_high_41
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12545_high_41
NF12545_high_41
[»] chr5 (29 HSPs)
chr5 (17-230)||(10746819-10747032)
chr5 (17-230)||(10740491-10740716)
chr5 (26-230)||(11048458-11048665)
chr5 (17-230)||(10762925-10763150)
chr5 (17-217)||(10604944-10605152)
chr5 (17-114)||(10716860-10716957)
chr5 (24-116)||(7193204-7193296)
chr5 (23-119)||(10652117-10652213)
chr5 (23-119)||(10660000-10660096)
chr5 (18-117)||(10565220-10565319)
chr5 (17-230)||(10611902-10612123)
chr5 (27-116)||(10588348-10588437)
chr5 (26-115)||(10216668-10216757)
chr5 (23-119)||(9836243-9836339)
chr5 (17-115)||(10559094-10559192)
chr5 (17-111)||(19605788-19605882)
chr5 (131-180)||(10559220-10559269)
chr5 (131-179)||(10588273-10588321)
chr5 (131-179)||(10652045-10652093)
chr5 (133-180)||(10659927-10659974)
chr5 (131-180)||(7193323-7193372)
chr5 (56-173)||(10581231-10581356)
chr5 (182-230)||(10216576-10216624)
chr5 (131-178)||(19605709-19605756)
chr5 (17-115)||(9825276-9825374)
chr5 (27-69)||(35755060-35755102)
chr5 (131-180)||(9825395-9825444)
chr5 (137-174)||(9849831-9849868)
chr5 (188-229)||(10566358-10566399)
[»] chr6 (7 HSPs)
chr6 (17-221)||(12899762-12899974)
chr6 (27-221)||(12958280-12958482)
chr6 (17-213)||(12948836-12949040)
chr6 (27-115)||(12932481-12932569)
chr6 (32-115)||(12907397-12907480)
chr6 (128-221)||(12907505-12907594)
chr6 (128-213)||(12932594-12932675)
[»] scaffold0692 (1 HSPs)
scaffold0692 (27-221)||(7495-7697)
[»] chr2 (3 HSPs)
chr2 (27-115)||(17923322-17923410)
chr2 (27-75)||(30663268-30663316)
chr2 (27-75)||(30671948-30671996)
[»] chr1 (3 HSPs)
chr1 (27-111)||(39875815-39875899)
chr1 (27-111)||(39883938-39884022)
chr1 (27-111)||(39890892-39890976)
[»] chr8 (3 HSPs)
chr8 (24-96)||(28605822-28605894)
chr8 (56-113)||(27723977-27724034)
chr8 (131-179)||(27723899-27723947)
[»] chr3 (2 HSPs)
chr3 (23-105)||(31467091-31467173)
chr3 (27-71)||(1153992-1154036)
[»] chr7 (1 HSPs)
chr7 (27-72)||(29623027-29623072)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 10747032 - 10746819
Alignment:
Q  17 caattagtcattcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctcag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10747032 caattagtcattcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctcag 10746933  T
Q  117 ccactagtggcaatactagtacaattggaataaaaggaactgttggctatgctcctccaggtatatatgttctaaattcttgagtcttccattgtttctt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10746932 ccactagtggcaatactagtacaattggaataaaaggaactgttggctatgctcctccaggtatatatgttctaaattcttgagtcttccattgtttctt 10746833  T
Q  217 tgaatactcctatg 230  Q
    ||||||||||||||    
T  10746832 tgaatactcctatg 10746819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 10740716 - 10740491
Alignment:
Q  17 caattagtcattcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctcag 116  Q
    ||||| ||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  10740716 caattggtccttcattgtgatctaaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcag 10740617  T
Q  117 ccactagtggca------------atactagtacaattggaataaaaggaactgttggctatgctcctccaggtatatatgttctaaattcttgagtctt 204  Q
    ||| |   |  |            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |     
T  10740616 ccattgacgatacctctcacaaggaaactagtacaattggaataaaaggaactgttggctatgctcctccaggtatatatgttctaaattcatgaatatc 10740517  T
Q  205 ccattgtttctttgaatactcctatg 230  Q
    ||||||||||||| ||| ||| ||||    
T  10740516 ccattgtttctttaaatcctcgtatg 10740491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 230
Target Start/End: Complemental strand, 11048665 - 11048458
Alignment:
Q  26 attcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctcagccactagtg 125  Q
    ||||| |||||||| |||||||| ||||| |||||| | || ||||||||||||||||||| |||||||||||| ||||||||||||||||||||   ||    
T  11048665 attcattgtgatctaaagccaagtaatgttcttcttaacgacgacatggttgctcatgtgagtgattttggcattgcaaaacttgtctcagccaccgatg 11048566  T
Q  126 gcaatactagtacaattggaataaaaggaactgttggctatgctcctccaggt---atatatgttctaaattcttgagtcttccattgtttctttgaata 222  Q
    |||||||||||||||||||||||||||||||  ||||||| ||||||||||||    | ||  |||||||| ||| | ||||||| |||||||||||||     
T  11048565 gcaatactagtacaattggaataaaaggaaccattggctacgctcctccaggtctgttctaatttctaaatgcttaaatcttccactgtttctttgaatt 11048466  T
Q  223 ctcctatg 230  Q
    ||||||||    
T  11048465 ctcctatg 11048458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 10763150 - 10762925
Alignment:
Q  17 caattagtcattcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctcag 116  Q
    ||||| ||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||   ||    
T  10763150 caattggtccttcattgtgatctaaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggaatagcaagactagttcaag 10763051  T
Q  117 ccactagtggca------------atactagtacaattggaataaaaggaactgttggctatgctcctccaggtatatatgttctaaattcttgagtctt 204  Q
    ||| |  | | |            | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  10763050 ccattgcttgtacctctcttaaggaaactagtacaactggaataaaaggaactgttggctatgctcctccaggtatatatgttctgaattcttgagtctc 10762951  T
Q  205 ccattgtttctttgaatactcctatg 230  Q
    ||||| ||||||||||| ||| ||||    
T  10762950 ccattatttctttgaatcctcgtatg 10762925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 10604944 - 10605152
Alignment:
Q  17 caattagtcattcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctcag 116  Q
    |||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||| ||| |||||      
T  10604944 caattagtcattcattgtgatctaaagccaagcaatgtcctacttgatgatgatatggttgctcatgtgagtgattttggcatagcaagactggtctcgt 10605043  T
Q  117 ccactagtgg------------caatactagtacaattggaataaaaggaactgttggctatgctcctccaggtatatatgttctaaattcttgagtctt 204  Q
    ||| | ||||             ||||||||||||||||| ||||||||||||||||| ||||||||||||||    |||||||||||||||||| ||||    
T  10605044 ccattggtggtacctctcatataaatactagtacaattgggataaaaggaactgttggatatgctcctccagg----tatgttctaaattcttgaatctt 10605139  T
Q  205 ccattgtttcttt 217  Q
    |  ||||||||||    
T  10605140 cagttgtttcttt 10605152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 10716957 - 10716860
Alignment:
Q  17 caattagtcattcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctc 114  Q
    |||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10716957 caattaatcattcattgtgatcttaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctc 10716860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 7193204 - 7193296
Alignment:
Q  24 tcattcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctcag 116  Q
    ||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  7193204 tcattcattgtgatctaaagccaagcaatgtccttcttgacgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcag 7193296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 10652213 - 10652117
Alignment:
Q  23 gtcattcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctcagcca 119  Q
    |||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  10652213 gtcattcattgtgatctaaagccaagtaatgtccttcttgatgacgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcagcca 10652117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 10660096 - 10660000
Alignment:
Q  23 gtcattcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctcagcca 119  Q
    |||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  10660096 gtcattcattgtgatctaaagccaagtaatgtccttcttgacgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcagcca 10660000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 10565220 - 10565319
Alignment:
Q  18 aattagtcattcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctcagc 117  Q
    |||| |||||||| |||||||| |||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||||||||    
T  10565220 aattggtcattcattgtgatctaaagccaagcaatatccttcttgacgatgacatggttgctcatgtgagtgattttggcatagcaagactcgtctcagc 10565319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 10611902 - 10612123
Alignment:
Q  17 caattagtcattcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctcag 116  Q
    ||||| ||| |||| |||||| | ||||||||||||||||| ||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||||| |    
T  10611902 caattggtccttcattgtgatataaagccaagcaatgtcctacttgatgatgatatggttgcacatgtgagtgattttggcatagcaagacttgtctcgg 10612001  T
Q  117 ccactagtgg------------caatactagtacaattggaataaaaggaactgttggctatgctcctccaggtatatatgttctaaattcttgagtctt 204  Q
    ||| | ||||             |||||||  ||||||||||| ||||| |||||||||||||||||||||||    |||||||||||||| |||  |||    
T  10612002 ccattggtggttcctctcataagaatactaagacaattggaattaaagggactgttggctatgctcctccagg----tatgttctaaattcatgaacctt 10612097  T
Q  205 ccattgtttctttgaatactcctatg 230  Q
      || ||||||||||||  |||||||    
T  10612098 tgatcgtttctttgaattttcctatg 10612123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 10588437 - 10588348
Alignment:
Q  27 ttcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctcag 116  Q
    |||| |||||| | ||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  10588437 ttcattgtgatataaagccaagcaacgtccttcttgacgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcag 10588348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 10216757 - 10216668
Alignment:
Q  26 attcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctca 115  Q
    ||||| |||||||| |||||||||||||| |||||  |||||||||||||||||||||||| ||||||||||||||||| | ||||||||    
T  10216757 attcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtgagtgattttggcatagcaacatttgtctca 10216668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 9836339 - 9836243
Alignment:
Q  23 gtcattcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctcagcca 119  Q
    |||||||| |||||| |||||||||||||  ||||||| |||||| ||||||||||||| |||| ||||||||||||||||| |||| |||||||||    
T  9836339 gtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtgagtgattttggcatagcaagacttatctcagcca 9836243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 10559094 - 10559192
Alignment:
Q  17 caattagtcattcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctca 115  Q
    ||||| ||| |||| |||||||| |||||||||||||||||| ||||||| ||||  ||||||||||||| ||||||||||||||||| ||| ||||||    
T  10559094 caattggtccttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatgtgagtgattttggcatagcaagactcgtctca 10559192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 19605882 - 19605788
Alignment:
Q  17 caattagtcattcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgt 111  Q
    ||||| ||| |||| |||||||| |||||||||||||||||| |||| || || || ||||| ||||||| ||||||||||||||||| ||||||    
T  19605882 caattggtccttcattgtgatctaaagccaagcaatgtccttattgacgacgatatcgttgcacatgtgagtgattttggcatagcaagacttgt 19605788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 10559220 - 10559269
Alignment:
Q  131 actagtacaattggaataaaaggaactgttggctatgctcctccaggtat 180  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  10559220 actagcacaattggaataaaagggactgttggctatgctcctccaggtat 10559269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 10588321 - 10588273
Alignment:
Q  131 actagtacaattggaataaaaggaactgttggctatgctcctccaggta 179  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  10588321 actagtacaattggaattaaagggactgttggctatgctcctccaggta 10588273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 10652093 - 10652045
Alignment:
Q  131 actagtacaattggaataaaaggaactgttggctatgctcctccaggta 179  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  10652093 actagtacaattggaattaaagggactgttggctatgctcctccaggta 10652045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 10659974 - 10659927
Alignment:
Q  133 tagtacaattggaataaaaggaactgttggctatgctcctccaggtat 180  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  10659974 tagtacaattggaattaaagggactgttggctatgctcctccaggtat 10659927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 7193323 - 7193372
Alignment:
Q  131 actagtacaattggaataaaaggaactgttggctatgctcctccaggtat 180  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||||||||||    
T  7193323 actagtacaattggaattaaagggactattggctatgctcctccaggtat 7193372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 173
Target Start/End: Original strand, 10581231 - 10581356
Alignment:
Q  56 cttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctcagccactagtgg------------caatactagtacaattg 143  Q
    ||||||||||||||||||||    ||||||| ||||||||||| ||||| |||||||||||||| | ||||             ||||||||||||| ||    
T  10581231 cttcttgatgatgacatggt----catgtgagtgattttggcacagcaagacttgtctcagccatttgtggtaccactcataagaatactagtacaactg 10581326  T
Q  144 gaataaaaggaactgttggctatgctcctc 173  Q
    |||||||||||||  |||||||||||||||    
T  10581327 gaataaaaggaacaattggctatgctcctc 10581356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 10216624 - 10216576
Alignment:
Q  182 tatgttctaaattcttgagtcttccattgtttctttgaatactcctatg 230  Q
    |||||||||||| ||| | ||||||||||||||||||||| ||||||||    
T  10216624 tatgttctaaatgcttaaatcttccattgtttctttgaattctcctatg 10216576  T

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Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 19605756 - 19605709
Alignment:
Q  131 actagtacaattggaataaaaggaactgttggctatgctcctccaggt 178  Q
    ||||| ||||||||||||||||| ||  ||||||||||||||||||||    
T  19605756 actagcacaattggaataaaagggaccattggctatgctcctccaggt 19605709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 9825276 - 9825374
Alignment:
Q  17 caattagtcattcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctca 115  Q
    |||||| || |||| |||||| | |||||||| ||| ||||| ||||||| || || ||| |||| | || |||||||||||| |||| ||||||||||    
T  9825276 caattaatccttcattgtgatataaagccaagtaatatccttgttgatgaagatattgtttctcaggcgagtgattttggcattgcaagacttgtctca 9825374  T

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Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 35755060 - 35755102
Alignment:
Q  27 ttcactgtgatctcaagccaagcaatgtccttcttgatgatga 69  Q
    ||||||||||| | |||||||||||||| ||||||||||||||    
T  35755060 ttcactgtgatattaagccaagcaatgttcttcttgatgatga 35755102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 9825395 - 9825444
Alignment:
Q  131 actagtacaattggaataaaaggaactgttggctatgctcctccaggtat 180  Q
    ||||| ||||||||| ||||||| |||||||| |||||||||||| ||||    
T  9825395 actagcacaattggactaaaagggactgttggatatgctcctccatgtat 9825444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 9849868 - 9849831
Alignment:
Q  137 acaattggaataaaaggaactgttggctatgctcctcc 174  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  9849868 acaattggaataaaagggactgttggatatgctcctcc 9849831  T

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Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 10566358 - 10566399
Alignment:
Q  188 ctaaattcttgagtcttccattgtttctttgaatactcctat 229  Q
    ||||| |||||| |||||||||||||||||||||| ||||||    
T  10566358 ctaaagtcttgaatcttccattgtttctttgaataatcctat 10566399  T

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Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 12899762 - 12899974
Alignment:
Q  17 caattagtcattcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctcag 116  Q
    ||||||||| |||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||     
T  12899762 caattagtctttcattgtgatataaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcaa 12899861  T
Q  117 ccactagtgg------------caatactagtacaattggaataaaaggaactgttggctatgctcctccaggtatatatgttctaaattcttgagtctt 204  Q
    | | |  |||             |||||||| |||||||||||||||||||| ||||| ||||||||||| ||    |||||| ||||||||||| ||||    
T  12899862 caatttctggtacctctcataagaatactagcacaattggaataaaaggaacagttggttatgctcctccggg----tatgttttaaattcttgaatctt 12899957  T
Q  205 ccattgtttctttgaat 221  Q
    ||||||||| |||||||    
T  12899958 ccattgtttttttgaat 12899974  T

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Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 27 - 221
Target Start/End: Original strand, 12958280 - 12958482
Alignment:
Q  27 ttcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctcagcca------- 119  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||| |||||||||| |||           
T  12958280 ttcactgtgatctaaagccaagcaatgtccttcttgatggtgacatggttgctcatgtgagtgattttggaatagcaagacttgtctcaaccatttccgg 12958379  T
Q  120 -----ctagtggcaatactagtacaattggaataaaaggaactgttggctatgctcctccaggtatatatgttctaaattcttgagtcttccattgtttc 214  Q
         ||| |   |||||||| |||||||||||||||||||| ||||| ||||||||||| ||    |||||| ||||||||||| |||||||||||||     
T  12958380 tacctctaataagaatactagcacaattggaataaaaggaacagttggttatgctcctccggg----tatgttttaaattcttgaatcttccattgtttt 12958475  T
Q  215 tttgaat 221  Q
    |||||||    
T  12958476 tttgaat 12958482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 12948836 - 12949040
Alignment:
Q  17 caattagtcattcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctcag 116  Q
    ||||||||| |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||     
T  12948836 caattagtccttcattgtgatctaaaaccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcaa 12948935  T
Q  117 cca------------ctagtggcaatactagtacaattggaataaaaggaactgttggctatgctcctccaggtatatatgttctaaattcttgagtctt 204  Q
    |||            ||| |   ||||||||||||||||||||||||||||| ||||| |||||||| || ||    || ||| || |||||||| ||||    
T  12948936 ccatttccagtacctctaataagaatactagtacaattggaataaaaggaacagttggttatgctccaccggg----tacgttttacattcttgaatctt 12949031  T
Q  205 ccattgttt 213  Q
    |||||||||    
T  12949032 ccattgttt 12949040  T

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Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 12932481 - 12932569
Alignment:
Q  27 ttcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctca 115  Q
    |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  12932481 ttcattgtgatctaaaaccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctca 12932569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 12907397 - 12907480
Alignment:
Q  32 tgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctca 115  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  12907397 tgtgatctaaaaccaagcaatgtccttcttgatgatgacatggttgctcatttgagtgattttggcatagcaagacttgtctca 12907480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 12907505 - 12907594
Alignment:
Q  128 aatactagtacaattggaataaaaggaactgttggctatgctcctccaggtatatatgttctaaattcttgagtcttccattgtttctttgaat 221  Q
    |||||||| | ||| |||||||||||||| ||||| |||||||| || ||    |||||| ||||||||| | ||||||||||||| |||||||    
T  12907505 aatactagcataatcggaataaaaggaacagttggttatgctccaccggg----tatgttttaaattctttaatcttccattgtttttttgaat 12907594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 12932594 - 12932675
Alignment:
Q  128 aatactagtacaattggaataaaaggaactgttggctatgctcctccaggtatatatgttctaaattcttgagtcttccattgttt 213  Q
    |||||||| ||||| ||| |||||||||| ||||| |||||||| || |||||    ||| ||||||||||| |||||||||||||    
T  12932594 aatactagcacaatcggagtaaaaggaacagttggttatgctccaccgggtat----gttttaaattcttgaatcttccattgttt 12932675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 221
Target Start/End: Original strand, 7495 - 7697
Alignment:
Q  27 ttcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctcagccactagtgg 126  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| |  |||    
T  7495 ttcattgtgatctaaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctcaaccatttctgg 7594  T
Q  127 ca------------atactagtacaattggaataaaaggaactgttggctatgctcctccaggtatatatgttctaaattcttgagtcttccattgtttc 214  Q
     |            ||||||| ||||| |||||||||||||| | ||| |||||||| || |||||    ||| ||||||||||| |||||||||||||     
T  7595 tacgtctaataagaatactagcacaatcggaataaaaggaacagctggttatgctccaccgggtat----gttttaaattcttgaatcttccattgtttt 7690  T
Q  215 tttgaat 221  Q
    |||||||    
T  7691 tttgaat 7697  T

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Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 17923410 - 17923322
Alignment:
Q  27 ttcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtctca 115  Q
    |||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  17923410 ttcattgtgatctaaaaccaagcaatgtccttcttgatgatgacatggttgctcatgtgagtgattttggcatagcaagacttgtctca 17923322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 30663268 - 30663316
Alignment:
Q  27 ttcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggt 75  Q
    ||||||||||| | || |||| |||||| ||||||||||||||||||||    
T  30663268 ttcactgtgatgtgaaaccaaacaatgttcttcttgatgatgacatggt 30663316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 30671948 - 30671996
Alignment:
Q  27 ttcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggt 75  Q
    ||||||||||| | || |||| |||||| ||||||||||||||||||||    
T  30671948 ttcactgtgatgtgaaaccaaacaatgttcttcttgatgatgacatggt 30671996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 39875899 - 39875815
Alignment:
Q  27 ttcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgt 111  Q
    |||| |||||| | || |||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||| | ||||||    
T  39875899 ttcattgtgatttaaaaccaagcaatgtccttcttgacgatgacatggttgctcatgtgagtgattttggcttagccagacttgt 39875815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 39884022 - 39883938
Alignment:
Q  27 ttcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgt 111  Q
    |||| |||||| | || |||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||| | ||||||    
T  39884022 ttcattgtgatttaaaaccaagcaatgtccttcttgacgatgacatggttgctcatgtgagtgattttggcttagccagacttgt 39883938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 39890976 - 39890892
Alignment:
Q  27 ttcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgt 111  Q
    |||| |||||| | || |||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||| | ||||||    
T  39890976 ttcattgtgatttaaaaccaagcaatgtccttcttgaagatgacatggttgctcatgtgagtgattttggcttagccagacttgt 39890892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 28605822 - 28605894
Alignment:
Q  24 tcattcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttgg 96  Q
    ||||||| |||||| | |||||||||||| | |||||| || ||||||||||||||||||||| |||||||||    
T  28605822 tcattcattgtgatttaaagccaagcaatattcttcttcataatgacatggttgctcatgtgagtgattttgg 28605894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 27724034 - 27723977
Alignment:
Q  56 cttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaaacttgtct 113  Q
    ||||||||  ||||||||||||||| ||| | |||||||||  |||||||||||||||    
T  27724034 cttcttgacaatgacatggttgctcgtgttagtgattttggactagcaaaacttgtct 27723977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 27723947 - 27723899
Alignment:
Q  131 actagtacaattggaataaaaggaactgttggctatgctcctccaggta 179  Q
    ||||| ||||||||||| || |||||| |||| ||||||||||||||||    
T  27723947 actagcacaattggaattaagggaactattggatatgctcctccaggta 27723899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 31467173 - 31467091
Alignment:
Q  23 gtcattcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgactgattttggcatagcaaa 105  Q
    |||||||| |||||| | ||||| ||||| || ||||||||||||   ||||| |||||||||| ||||||||||||||||||    
T  31467173 gtcattcattgtgatttaaagcctagcaacgttcttcttgatgattctatggtagctcatgtgagtgattttggcatagcaaa 31467091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 1153992 - 1154036
Alignment:
Q  27 ttcactgtgatctcaagccaagcaatgtccttcttgatgatgaca 71  Q
    ||||||||||| | |||||||||||||| ||||||||||||||||    
T  1153992 ttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 1154036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 29623072 - 29623027
Alignment:
Q  27 ttcactgtgatctcaagccaagcaatgtccttcttgatgatgacat 72  Q
    ||||||||||| | |||||||||||||| |||||||||||||||||    
T  29623072 ttcactgtgatgttaagccaagcaatgttcttcttgatgatgacat 29623027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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