View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12545_high_44 (Length: 238)
Name: NF12545_high_44
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_high_44 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 44892948 - 44893177
Alignment:
| Q |
1 |
aagaacttcgtgggttagctttggaattttctcaggagagagcccccaaatttgattttcacaaggagaatttctagaaagataaacattaattattgaa |
100 |
Q |
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| T |
44892948 |
aagaacttcgtgggttagctttggaattttctcaggagagagcccccaaatttgattttcacaaggagaatttctagaaagataaacattaattattgaa |
44893047 |
T |
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| Q |
101 |
gatcaaaaaggacgggaacaaagacggtctttcacttttatcccactactatatgggagtaattgtttcacggttgaatgttgaatctaaactaaaaagt |
200 |
Q |
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| T |
44893048 |
gatcaaaaaggacgggaacaaagacggtctttcacttttatcccactactatatgggagtaattgtttcacggttgaatgttgaatctaaactaaaaagt |
44893147 |
T |
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| Q |
201 |
atgtttcaattatactgtattctctctgct |
230 |
Q |
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| T |
44893148 |
atgtttcaattatactgtattctctctgct |
44893177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 44901980 - 44902044
Alignment:
| Q |
46 |
ccaaatttgattttcacaaggagaatttctagaaagataaacattaattattgaagatcaaaaagga |
112 |
Q |
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| T |
44901980 |
ccaaatttgatttccacaaggagaatttctagacagatggacatt-attgttgaaga-caaaaagga |
44902044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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