View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12545_high_54 (Length: 204)
Name: NF12545_high_54
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_high_54 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 49656677 - 49656500
Alignment:
| Q |
9 |
tgagatgaatgaatgaaatgagtctcattcaaataagacttttaatgcctctgactctgacccttctcttaaacctatgataacgcgagatctctatcgc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49656677 |
tgagatgaatgaatgaaatgagtctcattcaaataagacttttaatgcctctgactctgacccttctcttaaacctatgataacgcgagatctctatcgc |
49656578 |
T |
|
| Q |
109 |
gtcaaatcatatagtagtccatagttatccaatctaatcttcactgtaataacagaactgtgatactaagttcctttt |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49656577 |
gtcaaatcatatagtagtccatagttatccaatctaatcttcactgtaataacagaactgtgatactaagttcctttt |
49656500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University