View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12545_high_6 (Length: 602)

Name: NF12545_high_6
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12545_high_6
NF12545_high_6
[»] chr3 (7 HSPs)
chr3 (21-223)||(11294466-11294668)
chr3 (268-457)||(11295286-11295479)
chr3 (390-462)||(15287350-15287422)
chr3 (390-462)||(15751920-15751992)
chr3 (390-461)||(54501195-54501266)
chr3 (85-124)||(30187933-30187972)
chr3 (85-121)||(10948356-10948392)
[»] chr2 (4 HSPs)
chr2 (19-270)||(35430784-35431035)
chr2 (28-270)||(3250643-3250885)
chr2 (86-124)||(33035669-33035707)
chr2 (85-153)||(21829834-21829902)
[»] chr8 (10 HSPs)
chr8 (85-270)||(18004900-18005085)
chr8 (363-474)||(30266175-30266286)
chr8 (384-461)||(32796232-32796309)
chr8 (384-461)||(32811899-32811976)
chr8 (389-462)||(33121871-33121944)
chr8 (389-461)||(27476697-27476769)
chr8 (273-336)||(30265373-30265440)
chr8 (165-266)||(6743947-6744048)
chr8 (165-266)||(6654209-6654310)
chr8 (165-266)||(6734611-6734712)
[»] chr1 (5 HSPs)
chr1 (26-270)||(4693465-4693709)
chr1 (394-462)||(37079605-37079673)
chr1 (28-263)||(42910669-42910904)
chr1 (26-266)||(43913350-43913590)
chr1 (85-124)||(15175245-15175284)
[»] chr5 (6 HSPs)
chr5 (384-461)||(39137961-39138038)
chr5 (387-461)||(9011851-9011925)
chr5 (387-461)||(39124635-39124709)
chr5 (389-462)||(39682975-39683048)
chr5 (394-461)||(7994898-7994965)
chr5 (171-266)||(6217844-6217939)
[»] chr4 (2 HSPs)
chr4 (389-461)||(26306630-26306702)
chr4 (43-266)||(17403163-17403386)
[»] chr7 (7 HSPs)
chr7 (42-244)||(34148931-34149133)
chr7 (42-244)||(34177991-34178193)
chr7 (42-266)||(38432277-38432501)
chr7 (394-435)||(5041444-5041485)
chr7 (205-266)||(34148852-34148913)
chr7 (205-266)||(34178211-34178272)
chr7 (221-266)||(923506-923551)
[»] chr6 (5 HSPs)
chr6 (394-461)||(4869389-4869456)
chr6 (44-124)||(15160837-15160917)
chr6 (26-122)||(15472486-15472582)
chr6 (85-124)||(15184426-15184465)
chr6 (205-254)||(18093169-18093218)
[»] scaffold1243 (1 HSPs)
scaffold1243 (26-124)||(1345-1443)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 2e-91; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 11294466 - 11294668
Alignment:
Q  21 ctctaccttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttat 120  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11294466 ctctatcttgctgtgttctactgttttgcaggatcatgttcttgacagatggcgatgagtgctggatcctattaacggttactccgttaaggggacttat 11294565  T
Q  121 cagtttctaacacttccttacacatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggt 220  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||    
T  11294566 cagtttctaacacttcctgacacatcaatggagcgtggtctttatgatgcatcatggctgaagcaggtttcgctaaaggttgctatatttgtttggcggt 11294665  T
Q  221 ttc 223  Q
    |||    
T  11294666 ttc 11294668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 268 - 457
Target Start/End: Original strand, 11295286 - 11295479
Alignment:
Q  268 gcttatacacataattataaggaat----gaatttgtcccaaatggtataagcaatttattggttttggaatactgtatactcttggcctgaatctgttt 363  Q
    |||||||||||||||||||||||||    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  11295286 gcttatacacataattataaggaatgaatgaatttgtccgaaatggtataagcaatttattggttttggaatattgtatactcttggcctgaatctgatt 11295385  T
Q  364 aatatgaaagcaaaatgaatatcaattccgttgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaac 457  Q
    ||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11295386 aatatgaaagcaaaattgatatcaattccgttgtcgtccagcgattaggatatctggctttcacccaggagacccgggttcgattcccggcaac 11295479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 390 - 462
Target Start/End: Original strand, 15287350 - 15287422
Alignment:
Q  390 tccgttgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaacggaat 462  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15287350 tccgatgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcatcggaat 15287422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 390 - 462
Target Start/End: Complemental strand, 15751992 - 15751920
Alignment:
Q  390 tccgttgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaacggaat 462  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15751992 tccgatgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcatcggaat 15751920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 390 - 461
Target Start/End: Complemental strand, 54501266 - 54501195
Alignment:
Q  390 tccgttgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaacggaa 461  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  54501266 tccgatgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcatcggaa 54501195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 30187972 - 30187933
Alignment:
Q  85 gatcctattaacggttactccgttaaggggacttatcagt 124  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  30187972 gatcctattaatggttattccgttaaggggacttatcagt 30187933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 10948392 - 10948356
Alignment:
Q  85 gatcctattaacggttactccgttaaggggacttatc 121  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  10948392 gatcccattaatggttactccgttaaggggacttatc 10948356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 1e-70; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 35430784 - 35431035
Alignment:
Q  19 tgctctaccttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggactt 118  Q
    |||||| | ||| ||||| ||| ||||||||||||||||||| |||||| |||| | ||     |||||||||||||||||||||| |||||||||||||    
T  35430784 tgctcttctttgatgtgtgctattgttttgcaggatcatgttattgacagatggtgttggactctggatcctattaacggttactctgttaaggggactt 35430883  T
Q  119 atcagtttctaacacttccttacacatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcg 218  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| ||| ||||||||  ||||||||||| |||    
T  35430884 atcagtttcttacacttcctgacacatcaatggagcgtggtctttatgatgcagcatggttgaagcaggtctcgttaaaggtttctatatttgtttagcg 35430983  T
Q  219 gtttctctgcaacagacttcctaccaaagacaatctttttcgtaggagggct 270  Q
      ||||| |||||||||||||||||||||||||| ||||||||| |||||||    
T  35430984 ccttctccgcaacagacttcctaccaaagacaatatttttcgtatgagggct 35431035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 28 - 270
Target Start/End: Complemental strand, 3250885 - 3250643
Alignment:
Q  28 ttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagtttc 127  Q
    ||||||||||||  ||||||||||||||||||  |||||| |||| | |||||  | |||||||||||||||||||| |||||||  |||||||||||||    
T  3250885 ttgttgtgttctgttgttttgcaggatcatgtgattgacagatggtgttgagttctagatcctattaacggttactcggttaaggaaacttatcagtttc 3250786  T
Q  128 taacacttccttacacatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggtttctctg 227  Q
    | ||||||||| |||||||||||||||||||||||| || |||||| ||| ||||| ||||| || ||||||||  ||||||| |||||||| ||||| |    
T  3250785 ttacacttcctaacacatcaatggagcgtggtctttttggtgcagcttggttgaagcaggttccgttaaaggtttctatatttatttggcggcttctccg 3250686  T
Q  228 caacagacttcctaccaaagacaatctttttcgtaggagggct 270  Q
    ||| |||||||||||||||||||||||||||||||||||||||    
T  3250685 caatagacttcctaccaaagacaatctttttcgtaggagggct 3250643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 124
Target Start/End: Complemental strand, 33035707 - 33035669
Alignment:
Q  86 atcctattaacggttactccgttaaggggacttatcagt 124  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  33035707 atcctattaatggttattccgttaaggggacttatcagt 33035669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 21829834 - 21829902
Alignment:
Q  85 gatcctattaacggttactccgttaaggggacttatcagtttctaacacttccttacacatcaatggag 153  Q
    ||||||||||| ||||| ||||||||||| |||||||||| ||| ||  | ||  ||||||||||||||    
T  21829834 gatcctattaatggttattccgttaagggtacttatcagtatcttacgatgcccgacacatcaatggag 21829902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 85 - 270
Target Start/End: Complemental strand, 18005085 - 18004900
Alignment:
Q  85 gatcctattaacggttactccgttaaggggacttatcagtttctaacacttccttacacatcaatggagcgtggtctttatgatgcagcatggctgaagt 184  Q
    |||||||||||||||||| |||||||||||||||||||| |||| || ||  || ||||||||| ||||| |||||||||||||||||| ||| |||||     
T  18005085 gatcctattaacggttacaccgttaaggggacttatcagcttcttacgctaactgacacatcaacggagcttggtctttatgatgcagcgtggttgaagc 18004986  T
Q  185 aggtttcgctaaaggttgttatatttgtttggcggtttctctgcaacagacttcctaccaaagacaatctttttcgtaggagggct 270  Q
    ||||| |  |||||||| ||||||||||||||| | |||||  ||| ||||| |||||||||||||||||| ||||||||||||||    
T  18004985 aggttccattaaaggtttttatatttgtttggctgcttctccacaatagactccctaccaaagacaatcttcttcgtaggagggct 18004900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 363 - 474
Target Start/End: Original strand, 30266175 - 30266286
Alignment:
Q  363 taatatgaaagcaaaatgaatatcaattccgttgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaacggaat 462  Q
    ||||||||||||||| | |  ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  30266175 taatatgaaagcaaatttagcatcaactccattgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaatggaac 30266274  T
Q  463 acttttcgtttt 474  Q
    | |||| |||||    
T  30266275 attttttgtttt 30266286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 384 - 461
Target Start/End: Original strand, 32796232 - 32796309
Alignment:
Q  384 atcaattccgttgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaacggaa 461  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32796232 atcaattccattgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaatggaa 32796309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 384 - 461
Target Start/End: Original strand, 32811899 - 32811976
Alignment:
Q  384 atcaattccgttgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaacggaa 461  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32811899 atcaattccattgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaatggaa 32811976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 389 - 462
Target Start/End: Original strand, 33121871 - 33121944
Alignment:
Q  389 ttccgttgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaacggaat 462  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33121871 ttccattgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaatggaat 33121944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 389 - 461
Target Start/End: Complemental strand, 27476769 - 27476697
Alignment:
Q  389 ttccgttgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaacggaa 461  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27476769 ttccattgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaatggaa 27476697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 273 - 336
Target Start/End: Original strand, 30265373 - 30265440
Alignment:
Q  273 tacacataattataaggaatgaatttgtcccaaatggt----ataagcaatttattggttttggaata 336  Q
    |||||||||||||||||||||| ||||||| |||||||    |||||||||||||||||||| |||||    
T  30265373 tacacataattataaggaatgagtttgtccgaaatggttggcataagcaatttattggttttagaata 30265440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 165 - 266
Target Start/End: Original strand, 6743947 - 6744048
Alignment:
Q  165 tgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggtttctctgcaacagacttcctaccaaagacaatctttttcgtagg 264  Q
    ||||| ||||||||||||| ||||| || ||||||||   |||||||||||| || | ||  |||||||| | |||||||||||||||||| | ||||||    
T  6743947 tgatgtagcatggctgaagcaggttccgttaaaggtttcaatatttgtttggaggctccttcgcaacagattacctaccaaagacaatcttatccgtagg 6744046  T
Q  265 ag 266  Q
    ||    
T  6744047 ag 6744048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 165 - 266
Target Start/End: Original strand, 6654209 - 6654310
Alignment:
Q  165 tgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggtttctctgcaacagacttcctaccaaagacaatctttttcgtagg 264  Q
    ||||| ||||||||||||| ||||| || ||||||||   |||||||||||| || | ||  | |||||| | |||||||||||||||||| | ||||||    
T  6654209 tgatgtagcatggctgaagcaggttccgttaaaggtttcaatatttgtttggaggctccttcgtaacagattacctaccaaagacaatcttatccgtagg 6654308  T
Q  265 ag 266  Q
    ||    
T  6654309 ag 6654310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 165 - 266
Target Start/End: Original strand, 6734611 - 6734712
Alignment:
Q  165 tgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggtttctctgcaacagacttcctaccaaagacaatctttttcgtagg 264  Q
    ||||| ||||||||||||| ||||| || ||||||||   |||||||||||| || | ||  | |||||| | |||||||||||||||||| | ||||||    
T  6734611 tgatgtagcatggctgaagcaggttccgttaaaggtttcaatatttgtttggaggctccttcgtaacagattacctaccaaagacaatcttatccgtagg 6734710  T
Q  265 ag 266  Q
    ||    
T  6734711 ag 6734712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 5e-45; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 26 - 270
Target Start/End: Original strand, 4693465 - 4693709
Alignment:
Q  26 ccttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagtt 125  Q
    |||||||||||  || |||||||||||||||||||| |||||  ||||| ||||| |||||||||||||||| |||||| |||||||| ||||||||||     
T  4693465 ccttgttgtgtaatattgttttgcaggatcatgttcatgacaggtggcggtgagttttggatcctattaacgattactcggttaagggaacttatcagta 4693564  T
Q  126 tctaacacttccttacacatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggtttctc 225  Q
    ||| || |  ||| |||||||  |||||||| ||||||| || |  |  ||||||||| ||||| || |||||||    ||||||||||||||| |||||    
T  4693565 tctcacgcaacctgacacatctgtggagcgtagtctttacgacgttgtgtggctgaaggaggttccgttaaaggtatcaatatttgtttggcggcttctc 4693664  T
Q  226 tgcaacagacttcctaccaaagacaatctttttcgtaggagggct 270  Q
     |||||||||||||||||||||| |||||| | ||||||||||||    
T  4693665 cgcaacagacttcctaccaaagataatcttatccgtaggagggct 4693709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 394 - 462
Target Start/End: Complemental strand, 37079673 - 37079605
Alignment:
Q  394 ttgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaacggaat 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37079673 ttgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaatggaat 37079605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 28 - 263
Target Start/End: Original strand, 42910669 - 42910904
Alignment:
Q  28 ttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagtttc 127  Q
    |||||||||  || |||||||||||| ||||||||||| |  ||||| |  || |||||||||||||| |||||||| ||||||||||||||||||| ||    
T  42910669 ttgttgtgtaatattgttttgcaggaccatgttcttgataggtggcggttggttttggatcctattaatggttactcagttaaggggacttatcagtatc 42910768  T
Q  128 taacacttccttacacatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggtttctctg 227  Q
    | || |   || ||||||   ||||||| |||||||  |||||||  ||||||||| ||| | || |||||||    |||||||| ||| || || || |    
T  42910769 tcacgcgagctgacacatttgtggagcgcggtcttttcgatgcagtgtggctgaagcaggctccgttaaaggtctcaatatttgtgtggaggcttttccg 42910868  T
Q  228 caacagacttcctaccaaagacaatctttttcgtag 263  Q
     ||||||||||||||||||||||||||| |||||||    
T  42910869 taacagacttcctaccaaagacaatcttattcgtag 42910904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 266
Target Start/End: Complemental strand, 43913590 - 43913350
Alignment:
Q  26 ccttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagtt 125  Q
    |||||||||||  || |||||||||||||||||||| |||||  ||||| |  || ||||| | |||||| |||||||| ||||| ||||||||||| |     
T  43913590 ccttgttgtgtaatattgttttgcaggatcatgttcatgacaggtggcggttggttttggagcatattaatggttactcagttaaagggacttatcaata 43913491  T
Q  126 tctaacacttccttacacatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgtta-tatttgtttggcggtttct 224  Q
    ||| || |  ||| | |||||  ||||||| ||| |||| || || |  ||||||||| || ||  | |||||| ||| | |||| ||||| ||| ||||    
T  43913490 tctcacgcgacctgatacatccgtggagcgcggtatttacgacgctgtgtggctgaagcagtttctgttaaagg-tgtcactattcgtttgacggcttct 43913392  T
Q  225 ctgcaacagacttcctaccaaagacaatctttttcgtaggag 266  Q
    | |||||||||||||||||||| | |||||| | ||||||||    
T  43913391 ccgcaacagacttcctaccaaatataatcttatccgtaggag 43913350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 15175245 - 15175284
Alignment:
Q  85 gatcctattaacggttactccgttaaggggacttatcagt 124  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  15175245 gatcctattagcggttactccgttaaggagacttatcagt 15175284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 384 - 461
Target Start/End: Original strand, 39137961 - 39138038
Alignment:
Q  384 atcaattccgttgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaacggaa 461  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39137961 atcaattccattgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaatggaa 39138038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 387 - 461
Target Start/End: Complemental strand, 9011925 - 9011851
Alignment:
Q  387 aattccgttgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaacggaa 461  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9011925 aattccattgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaatggaa 9011851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 387 - 461
Target Start/End: Original strand, 39124635 - 39124709
Alignment:
Q  387 aattccgttgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaacggaa 461  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39124635 aattccattgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaatggaa 39124709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 389 - 462
Target Start/End: Complemental strand, 39683048 - 39682975
Alignment:
Q  389 ttccgttgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaacggaat 462  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39683048 ttccattgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaatggaat 39682975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 394 - 461
Target Start/End: Complemental strand, 7994965 - 7994898
Alignment:
Q  394 ttgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaacggaa 461  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  7994965 ttgtcgtccagcggttaggatgtctggctttcacccaggagacccgggttcgattcccggcaatggaa 7994898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 6217844 - 6217939
Alignment:
Q  171 agcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggtttctctgcaacagacttcctaccaaagacaatctttttcgtaggag 266  Q
    |||||||||||||||||||    ||||||||   |||||||||||| || | ||  |||| ||||| |||||||||||||||||| | ||||||||    
T  6217844 agcatggctgaagtaggttctattaaaggtttcaatatttgtttggaggctccttcgcaatagactacctaccaaagacaatcttatccgtaggag 6217939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 389 - 461
Target Start/End: Complemental strand, 26306702 - 26306630
Alignment:
Q  389 ttccgttgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaacggaa 461  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26306702 ttccattgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaatggaa 26306630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 43 - 266
Target Start/End: Original strand, 17403163 - 17403386
Alignment:
Q  43 gttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagtttctaacacttccttaca 142  Q
    ||||||||||||||||||| |||||  ||||| |  || |||||||||| ||| |||||||  ||||||||||||| ||||| ||| || |   |  |||    
T  17403163 gttttgcaggatcatgttcatgacaggtggcggttggttttggatcctactaatggttacttagttaaggggacttgtcagtatctcacgcgatccgaca 17403262  T
Q  143 catcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggtttctctgcaacagacttcctac 242  Q
    ||||  ||||| | ||||| ||||||||||  ||| ||||| ||| | || |||| ||    ||||||||||||||| || || ||||||||||||||||    
T  17403263 catctgtggagtgcggtctctatgatgcagtgtgggtgaagcaggctccgttaaaagtctcaatatttgtttggcggcttttccgcaacagacttcctac 17403362  T
Q  243 caaagacaatctttttcgtaggag 266  Q
    ||||||||||||| | ||||||||    
T  17403363 caaagacaatcttatccgtaggag 17403386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 42 - 244
Target Start/End: Complemental strand, 34149133 - 34148931
Alignment:
Q  42 tgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagtttctaacacttccttac 141  Q
    |||||||||||||||||||| |||||  ||||| || || ||||||||||| ||||||||||| || ||| |||||||||||| ||| || |  | | |     
T  34149133 tgttttgcaggatcatgttcatgacacgtggcggtgggttttggatcctatcaacggttactcagtcaagaggacttatcagtatctcacgcgacatgat 34149034  T
Q  142 acatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggtttctctgcaacagacttccta 241  Q
    ||||| |||||||| |||||||| || |  |   |||||||| ||||| || |||||||    ||||||||||||||| ||||| |||||||||||||||    
T  34149033 acatctatggagcgcggtctttacgacgttgtgaggctgaagcaggttccgttaaaggtatcaatatttgtttggcggcttctccgcaacagacttccta 34148934  T
Q  242 cca 244  Q
    |||    
T  34148933 cca 34148931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 42 - 244
Target Start/End: Original strand, 34177991 - 34178193
Alignment:
Q  42 tgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagtttctaacacttccttac 141  Q
    |||||||||||||||||||| |||||  ||||| || || ||||||||||| ||||||||||| || ||| |||||||||||| ||| || |  | | |     
T  34177991 tgttttgcaggatcatgttcatgacacgtggcggtgggttttggatcctatcaacggttactcagtcaagaggacttatcagtatctcacgcgacatgat 34178090  T
Q  142 acatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggtttctctgcaacagacttccta 241  Q
    ||||| |||||||| |||||||| || |  |   |||||||| ||||| || |||||||    ||||||||||||||| ||||| |||||||||||||||    
T  34178091 acatctatggagcgcggtctttacgacgttgtgaggctgaagcaggttccgttaaaggtatcaatatttgtttggcggcttctccgcaacagacttccta 34178190  T
Q  242 cca 244  Q
    |||    
T  34178191 cca 34178193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 266
Target Start/End: Original strand, 38432277 - 38432501
Alignment:
Q  42 tgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagtttctaacacttccttac 141  Q
    |||||||||| | |||||||||||||  ||| | || ||  ||||||||||||||||||| | ||||||||||  ||| |||| ||| ||  |  || ||    
T  38432277 tgttttgcagaaccatgttcttgacaggtggtgttgggttatggatcctattaacggttatttcgttaagggggtttaccagtatctcacgttatctgac 38432376  T
Q  142 acatcaatggagcgtggtctttatgatgcagcatggctgaagtaggtttcgctaaaggttgttatatttgtttggcggtttctctgcaacagacttccta 241  Q
    || ||  ||||||| ||  ||| ||||| ||||||||||||| ||| | || ||||||||   |||||||||||| || | ||  |||||||||| ||||    
T  38432377 acctctctggagcgaggcttttttgatgtagcatggctgaagcagggtccgttaaaggtttcaatatttgtttggaggatccttcgcaacagactaccta 38432476  T
Q  242 ccaaagacaatctttttcgtaggag 266  Q
    |||||| ||||||| | ||||||||    
T  38432477 ccaaaggcaatcttatccgtaggag 38432501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 394 - 435
Target Start/End: Original strand, 5041444 - 5041485
Alignment:
Q  394 ttgtcgtccagcggttaggatatctggctttcacccaggaga 435  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  5041444 ttgtcgtccagcggttaggatatctggctttcacctaggaga 5041485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 34148913 - 34148852
Alignment:
Q  205 atatttgtttggcggtttctctgcaacagacttcctaccaaagacaatctttttcgtaggag 266  Q
    ||||||||||||||| |||||  |||||| |||||||||||||| |||||| ||||||||||    
T  34148913 atatttgtttggcggcttctccacaacagtcttcctaccaaagataatcttattcgtaggag 34148852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 34178211 - 34178272
Alignment:
Q  205 atatttgtttggcggtttctctgcaacagacttcctaccaaagacaatctttttcgtaggag 266  Q
    ||||||||||||||| |||||  |||||| |||||||||||||| |||||| ||||||||||    
T  34178211 atatttgtttggcggcttctccacaacagtcttcctaccaaagataatcttattcgtaggag 34178272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 923506 - 923551
Alignment:
Q  221 ttctctgcaacagacttcctaccaaagacaatctttttcgtaggag 266  Q
    ||||| ||||||||||||| ||||||||||||||| ||||| ||||    
T  923506 ttctccgcaacagacttccaaccaaagacaatcttcttcgtcggag 923551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 394 - 461
Target Start/End: Complemental strand, 4869456 - 4869389
Alignment:
Q  394 ttgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcaacggaa 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  4869456 ttgtcgtccagcggttaggatatctggctttcacccaggagacccgggtacgattccaggcaatggaa 4869389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 15160917 - 15160837
Alignment:
Q  44 ttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagt 124  Q
    |||||||||||||||||||||| |  ||||| ||  |  | |||||||||||| |||||||||||||||||||||||||||    
T  15160917 ttttgcaggatcatgttcttgataggtggcggtggattcttgatcctattaactgttactccgttaaggggacttatcagt 15160837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 15472486 - 15472582
Alignment:
Q  26 ccttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatca 122  Q
    |||||||||||  || | |||||||||||||||||||||| |  ||||| ||| | ||  ||| ||||||| ||||||| |||||||||||||||||    
T  15472486 ccttgttgtgtcatattattttgcaggatcatgttcttgataggtggcggtgaattttttatcatattaactgttactctgttaaggggacttatca 15472582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 15184465 - 15184426
Alignment:
Q  85 gatcctattaacggttactccgttaaggggacttatcagt 124  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  15184465 gatcctattaacggttactccattaaggggacttatcagt 15184426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 18093169 - 18093218
Alignment:
Q  205 atatttgtttggcggtttctctgcaacagacttcctaccaaagacaatct 254  Q
    |||||||| ||||||||| || |||||||||| |||||||||||||||||    
T  18093169 atatttgtgtggcggtttttccgcaacagactccctaccaaagacaatct 18093218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1243 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold1243
Description:

Target: scaffold1243; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 1345 - 1443
Alignment:
Q  26 ccttgttgtgttctactgttttgcaggatcatgttcttgacatatggcgatgagtgttggatcctattaacggttactccgttaaggggacttatcagt 124  Q
    |||||||||||  || | |||||||||||||||||||||| |  ||||| ||  |  | ||||||||||||||||||||||||||||||||||||||||    
T  1345 ccttgttgtgtcatattattttgcaggatcatgttcttgataggtggcggtggattcttgatcctattaacggttactccgttaaggggacttatcagt 1443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University