View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12545_high_9 (Length: 452)
Name: NF12545_high_9
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_high_9 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 4359560 - 4359136
Alignment:
| Q |
18 |
ctggcagcttcaaactcagcccctcaacagctttagttccctgtgaaatataaatgaccaaagcaaaacatcctataaagccgggaagtataatcatgtg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4359560 |
ctggcagcttcaaactcagcccctcaacagctttagttccctgtgaaatataaatgaccaaagtaaaacatcctataaagccgagaagtataatcatgtg |
4359461 |
T |
|
| Q |
118 |
taaaactaaaagatataaggcagataaaaaacatgcaatgaaacatttgtgcatgctgatatgaagcacaaaatgattcacaaccaaactaatattcaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4359460 |
taaaactaaaagatataaggcagataaaaaacatgtaatgaaacatttgtgcatgctgatatgaagcacaaaatgattcacaaccaaactaatattcaaa |
4359361 |
T |
|
| Q |
218 |
acttctgtgctaacaacaacaaaagtgaatgttgattactagctaaatgtttttgctatttaagattgagatgtttaaaatctagactttcttatttaac |
317 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4359360 |
acttctgtgctaacaacaacaaaattgaatgttgattactagctaaatgtttttgctatttaagattgagatgtttaaaatctagactttcttatttaac |
4359261 |
T |
|
| Q |
318 |
caaaaacaaatattaaaaatccagaatataaaacaaagcatatgaagttcttacggtatgttctaacaagacatcaatcacatcctcatgaaaccacagc |
417 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4359260 |
caaaaacaaatattaaaaatccataatataaaacaaagtatatgaagttcttacggtatgttctaacaagacatcaatcacatcctcatgaaaccacagc |
4359161 |
T |
|
| Q |
418 |
ctactatgttcctcaggctcctttg |
442 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
4359160 |
ctactatgttcctcaggctcctttg |
4359136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 4344104 - 4343667
Alignment:
| Q |
18 |
ctggcagcttcaaactcagcccctcaacagctttagttccctgtgaaatataaatgaccaaagcaaaacatcctataaagccgggaagtataatcatgtg |
117 |
Q |
| |
|
|||||| ||| ||| |||| || ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||| ||| ||||| | |||||| || |
|
|
| T |
4344104 |
ctggcatcttaaaagtcagtccttcaacagcttttgttccctgtgaaatataaaagaccaaagtaaaacatcctatagagctaggaagcacaatcatatg |
4344005 |
T |
|
| Q |
118 |
t--aaaactaaaagatataaggcagataaaaaacatgcaatgaaac-----atttgtgcat-gctgatatgaagcacaaaatgattcacaaccaaactaa |
209 |
Q |
| |
|
| ||||||||||||||||||| ||| ||||||| || |||||||| |||||| | | || |||||||||| ||||||||||||||||||| |
|
|
| T |
4344004 |
tgcaaaactaaaagatataaggtaga-aaaaaacttgtaatgaaaccaatcatttgttactaggagacgggaagcacaaactgattcacaaccaaactaa |
4343906 |
T |
|
| Q |
210 |
tattcaaaacttctgtgctaacaacaacaaaagtgaatgttgattactagct-aaatg-tttttgctatttaagattgagatgttt-aaaatctagactt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||| ||| ||||||||||||| |
|
|
| T |
4343905 |
tattcaaaacttctgtgctaacaacaacaaaagtgaatgttgattactagctcaaatgttttttgttttttaagattgagatatttcaaaatctagactt |
4343806 |
T |
|
| Q |
307 |
tcttatttaaccaaaaacaaatattaaaaatccagaatat---aaaacaaagcatatgaagttcttacggtatgttctaacaagacatcaatcacatcct |
403 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||| |||| |||| ||||| || |||||| |||||||||||||||||||||| ||| || | |
|
|
| T |
4343805 |
tcttatttaaccagaaacaaatattgaaaatccagaatataaaaaaataaagtatatgtagatcttacagtatgttctaacaagacatcaagcacgtctt |
4343706 |
T |
|
| Q |
404 |
catgaaaccacagcctactatgttcctcaggctcctttg |
442 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4343705 |
catgaaaccacaacctactatgttcctcaggctcctttg |
4343667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 268 - 438
Target Start/End: Complemental strand, 4334450 - 4334282
Alignment:
| Q |
268 |
ttttgctatttaagattgagatgtttaaaatctagactttcttatttaaccaaaaacaaatattaaaaatccagaatataaaacaaagcatatgaagttc |
367 |
Q |
| |
|
||||||| || ||| ||||||| ||| ||||||||| |||||||||||||||||||||||| |||||| |||| ||| |||||||||| ||| ||||||| |
|
|
| T |
4334450 |
ttttgcttttaaagtttgagatattttaaatctagattttcttatttaaccaaaaacaaattttaaaa-tcca-aatttaaaacaaagtataagaagttc |
4334353 |
T |
|
| Q |
368 |
ttacggtatgttctaacaagacatcaatcacatcctcatgaaaccacagcctactatgttcctcaggctcc |
438 |
Q |
| |
|
|||| ||||||||| |||| ||||||| |||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
4334352 |
ttacagtatgttctgacaatacatcaagcacatcctcatgaaaccacaacctactacgttcctcaggctcc |
4334282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 193 - 442
Target Start/End: Complemental strand, 4352199 - 4351955
Alignment:
| Q |
193 |
attcacaaccaaactaatattcaaaacttctgtgctaacaacaacaaaagtgaatgttgattactagctaaatgtttttgctatttaagattgagatgtt |
292 |
Q |
| |
|
||||||||||||||||||||| ||| ||| || |||||||||| || | ||||||||||||||||||| || |||| |||| ||||||| || |
|
|
| T |
4352199 |
attcacaaccaaactaatattgaaagcttttgcgctaacaacagcacagatgaatgttgattactagctcaaa-----tgcttactaagtttgagatatt |
4352105 |
T |
|
| Q |
293 |
taaaatctagactttcttatttaaccaaaaacaaatattaaaaatccagaatataaaacaaagcatatgaagttcttacggtatgttctaacaagacatc |
392 |
Q |
| |
|
| || | | | |||| |||||||| ||||||||||||| ||||| ||||| |||||||||| ||||||||||||||| ||||||| | |||| ||||| |
|
|
| T |
4352104 |
ttcaacccaaattttcatatttaactaaaaacaaatatttaaaatacagaacttaaaacaaagtatatgaagttcttacagtatgttttgacaatacatc |
4352005 |
T |
|
| Q |
393 |
aatcacatcctcatgaaaccacagcctactatgttcctcaggctcctttg |
442 |
Q |
| |
|
|| ||||||| | |||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
4352004 |
aagcacatccccgtgaaaccacaacctactacgttcctcaggctcctttg |
4351955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 295 - 438
Target Start/End: Original strand, 4125569 - 4125712
Alignment:
| Q |
295 |
aaatctagactttcttatttaaccaaaaacaaatattaaaaatccagaatataaaacaaagcatatgaagttcttacggtatgttctaacaagacatcaa |
394 |
Q |
| |
|
||||| ||| ||||||||||||||||||||| ||||| ||||| ||||| |||||||||| ||||||| ||||||| ||||||||| |||| | ||||| |
|
|
| T |
4125569 |
aaatcgagaatttcttatttaaccaaaaacagatattttaaatcaagaatttaaaacaaagtatatgaaattcttaccgtatgttctgacaatatatcaa |
4125668 |
T |
|
| Q |
395 |
tcacatcctcatgaaaccacagcctactatgttcctcaggctcc |
438 |
Q |
| |
|
|||||||||||||| |||||| ||||||| |||||||||||||| |
|
|
| T |
4125669 |
tcacatcctcatgataccacaacctactacgttcctcaggctcc |
4125712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 295 - 438
Target Start/End: Original strand, 4322231 - 4322374
Alignment:
| Q |
295 |
aaatctagactttcttatttaaccaaaaacaaatattaaaaatccagaatataaaacaaagcatatgaagttcttacggtatgttctaacaagacatcaa |
394 |
Q |
| |
|
||||||||| |||||||||| ||||| ||||||| || || |||||| |||||||||| ||||||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
4322231 |
aaatctagatcttcttatttactcaaaataaaatatttaatattcagaatttaaaacaaagtatatgaagttcttacagtatgttctgacaatacatcaa |
4322330 |
T |
|
| Q |
395 |
tcacatcctcatgaaaccacagcctactatgttcctcaggctcc |
438 |
Q |
| |
|
|||||| ||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
4322331 |
gcacatcatcatgaaaccacaacctactacgttcctcaggctcc |
4322374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 4352383 - 4352249
Alignment:
| Q |
18 |
ctggcagcttcaaactcagcccctcaacagctttagttccctgtgaaatataaatgaccaaa-gcaaaacatcctataaagccgggaagtataatcatgt |
116 |
Q |
| |
|
|||||| ||| ||| |||| || |||||| |||| |||||||| |||||||||| ||||||| | |||||||| |||| |||| ||||| | || ||| | |
|
|
| T |
4352383 |
ctggcatcttaaaagtcagtccttcaacaacttttgttccctgagaaatataaaggaccaaaagtaaaacatcttatagagccaggaagcacaaccatat |
4352284 |
T |
|
| Q |
117 |
g--taaaactaaaagatataaggcagataaaaaac |
149 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |
|
|
| T |
4352283 |
gagtaaaactaaaagatataaggcagataaaaaac |
4352249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 4321937 - 4322069
Alignment:
| Q |
19 |
tggcagcttcaaactcagcccctcaacagctttagttccctgtgaaatataaatgacca-aagcaaaacatcctataaagccgggaagtataa--tcatg |
115 |
Q |
| |
|
||||| ||||||| |||| |||||||||||||| ||||||| ||||||||||| ||||| || ||||||| ||| | ||| ||||| | || |||| |
|
|
| T |
4321937 |
tggcatcttcaaagtcagtccctcaacagcttttgttccctatgaaatataaaggaccagaattaaaacatgctacagagctaggaagcacaaccacatg |
4322036 |
T |
|
| Q |
116 |
tgtaaaactaaaagatataaggcagataaaaaa |
148 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
4322037 |
tgtaaaactaaaagatataaggcaaataaaaaa |
4322069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 4125342 - 4125492
Alignment:
| Q |
18 |
ctggcagcttcaaactcagcccctcaacagctttagttccc----tgtgaaatataaatgacc-aaagcaaaacatcctataaagccgggaagtataat- |
111 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||| |||||| | |||||||||| |||| |||| ||||||| ||| | |||| ||||| | ||| |
|
|
| T |
4125342 |
ctggcagcttcaaagtcagtccctcaacagcttttgttccctatatatgaaatataatggaccaaaagtaaaacatgctacacagccaggaagcacaata |
4125441 |
T |
|
| Q |
112 |
-catgtgtaaaactaaaagatataaggcagataaaaaacatgcaatgaaac |
161 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
4125442 |
atatgtgtaaaactaaaagatagtaggcagataaaaaatttgtaatgaaac |
4125492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 4334646 - 4334585
Alignment:
| Q |
18 |
ctggcagcttcaaactcagcccctcaacagctttagttccctgtgaaatataaatgaccaaa |
79 |
Q |
| |
|
|||||||||||||| ||| |||||||||| ||| ||||||||||||||||||| ||||||| |
|
|
| T |
4334646 |
ctggcagcttcaaagtcaatccctcaacagtttttgttccctgtgaaatataaaggaccaaa |
4334585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 4334517 - 4334462
Alignment:
| Q |
180 |
gaagcacaaaatgattcacaaccaaactaatattcaaaacttctgtgctaacaaca |
235 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| ||| || |||||||||| |
|
|
| T |
4334517 |
gaagcacaaaatgattaataaccaaactaatattcaaagcttttgcgctaacaaca |
4334462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 415
Target Start/End: Original strand, 5104065 - 5104121
Alignment:
| Q |
359 |
atgaagttcttacggtatgttctaacaagacatcaatcacatcctcatgaaaccaca |
415 |
Q |
| |
|
||||||||||||| ||||||||| |||| |||| || |||||| ||||||||||||| |
|
|
| T |
5104065 |
atgaagttcttaccgtatgttctgacaatacatgaagcacatcgtcatgaaaccaca |
5104121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 415
Target Start/End: Complemental strand, 5424569 - 5424506
Alignment:
| Q |
352 |
aaagcatatgaagttcttacggtatgttctaacaagacatcaatcacatcctcatgaaaccaca |
415 |
Q |
| |
|
|||||||||||||||||||| || || ||| | || |||| || |||||||||||||||||||| |
|
|
| T |
5424569 |
aaagcatatgaagttcttacagtttgatctgataatacatgaagcacatcctcatgaaaccaca |
5424506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 416
Target Start/End: Original strand, 5133086 - 5133155
Alignment:
| Q |
347 |
aaaacaaagcatatgaagttcttacggtatgttctaacaagacatcaatcacatcctcatgaaaccacag |
416 |
Q |
| |
|
||||||||||||| ||||||||||| || |||| | | | ||||||| ||||||||| ||||||||||| |
|
|
| T |
5133086 |
aaaacaaagcataagaagttcttactgtttgttttgatagtacatcaagcacatcctcgtgaaaccacag |
5133155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 5382699 - 5382658
Alignment:
| Q |
38 |
ccctcaacagctttagttccctgtgaaatataaatgaccaaa |
79 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| |||||||| |
|
|
| T |
5382699 |
ccctcaacagcttttgttccctatgaaatataattgaccaaa |
5382658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 5396020 - 5395983
Alignment:
| Q |
180 |
gaagcacaaaatgattcacaaccaaactaatattcaaa |
217 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
5396020 |
gaagcacaaaacgattcacaaccaaactaattttcaaa |
5395983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 9610 - 9651
Alignment:
| Q |
38 |
ccctcaacagctttagttccctgtgaaatataaatgaccaaa |
79 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| |||||||| |
|
|
| T |
9610 |
ccctcaacagcttttgttccctatgaaatataattgaccaaa |
9651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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