View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12545_low_10 (Length: 452)

Name: NF12545_low_10
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12545_low_10
NF12545_low_10
[»] chr4 (11 HSPs)
chr4 (18-442)||(4359136-4359560)
chr4 (18-442)||(4343667-4344104)
chr4 (268-438)||(4334282-4334450)
chr4 (193-442)||(4351955-4352199)
chr4 (295-438)||(4125569-4125712)
chr4 (295-438)||(4322231-4322374)
chr4 (18-149)||(4352249-4352383)
chr4 (19-148)||(4321937-4322069)
chr4 (18-161)||(4125342-4125492)
chr4 (18-79)||(4334585-4334646)
chr4 (180-235)||(4334462-4334517)
[»] chr6 (5 HSPs)
chr6 (359-415)||(5104065-5104121)
chr6 (352-415)||(5424506-5424569)
chr6 (347-416)||(5133086-5133155)
chr6 (38-79)||(5382658-5382699)
chr6 (180-217)||(5395983-5396020)
[»] scaffold0294 (1 HSPs)
scaffold0294 (38-79)||(9610-9651)


Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 4359560 - 4359136
Alignment:
Q  18 ctggcagcttcaaactcagcccctcaacagctttagttccctgtgaaatataaatgaccaaagcaaaacatcctataaagccgggaagtataatcatgtg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  4359560 ctggcagcttcaaactcagcccctcaacagctttagttccctgtgaaatataaatgaccaaagtaaaacatcctataaagccgagaagtataatcatgtg 4359461  T
Q  118 taaaactaaaagatataaggcagataaaaaacatgcaatgaaacatttgtgcatgctgatatgaagcacaaaatgattcacaaccaaactaatattcaaa 217  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4359460 taaaactaaaagatataaggcagataaaaaacatgtaatgaaacatttgtgcatgctgatatgaagcacaaaatgattcacaaccaaactaatattcaaa 4359361  T
Q  218 acttctgtgctaacaacaacaaaagtgaatgttgattactagctaaatgtttttgctatttaagattgagatgtttaaaatctagactttcttatttaac 317  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4359360 acttctgtgctaacaacaacaaaattgaatgttgattactagctaaatgtttttgctatttaagattgagatgtttaaaatctagactttcttatttaac 4359261  T
Q  318 caaaaacaaatattaaaaatccagaatataaaacaaagcatatgaagttcttacggtatgttctaacaagacatcaatcacatcctcatgaaaccacagc 417  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4359260 caaaaacaaatattaaaaatccataatataaaacaaagtatatgaagttcttacggtatgttctaacaagacatcaatcacatcctcatgaaaccacagc 4359161  T
Q  418 ctactatgttcctcaggctcctttg 442  Q
    |||||||||||||||||||||||||    
T  4359160 ctactatgttcctcaggctcctttg 4359136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 4344104 - 4343667
Alignment:
Q  18 ctggcagcttcaaactcagcccctcaacagctttagttccctgtgaaatataaatgaccaaagcaaaacatcctataaagccgggaagtataatcatgtg 117  Q
    |||||| ||| ||| |||| || ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||| |||  ||||| | |||||| ||    
T  4344104 ctggcatcttaaaagtcagtccttcaacagcttttgttccctgtgaaatataaaagaccaaagtaaaacatcctatagagctaggaagcacaatcatatg 4344005  T
Q  118 t--aaaactaaaagatataaggcagataaaaaacatgcaatgaaac-----atttgtgcat-gctgatatgaagcacaaaatgattcacaaccaaactaa 209  Q
    |  ||||||||||||||||||| ||| ||||||| || ||||||||     ||||||   | |  ||   |||||||||| |||||||||||||||||||    
T  4344004 tgcaaaactaaaagatataaggtaga-aaaaaacttgtaatgaaaccaatcatttgttactaggagacgggaagcacaaactgattcacaaccaaactaa 4343906  T
Q  210 tattcaaaacttctgtgctaacaacaacaaaagtgaatgttgattactagct-aaatg-tttttgctatttaagattgagatgttt-aaaatctagactt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||| ||| |||||||||||||    
T  4343905 tattcaaaacttctgtgctaacaacaacaaaagtgaatgttgattactagctcaaatgttttttgttttttaagattgagatatttcaaaatctagactt 4343806  T
Q  307 tcttatttaaccaaaaacaaatattaaaaatccagaatat---aaaacaaagcatatgaagttcttacggtatgttctaacaagacatcaatcacatcct 403  Q
    ||||||||||||| ||||||||||| ||||||||||||||   |||| |||| ||||| || |||||| |||||||||||||||||||||| ||| || |    
T  4343805 tcttatttaaccagaaacaaatattgaaaatccagaatataaaaaaataaagtatatgtagatcttacagtatgttctaacaagacatcaagcacgtctt 4343706  T
Q  404 catgaaaccacagcctactatgttcctcaggctcctttg 442  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  4343705 catgaaaccacaacctactatgttcctcaggctcctttg 4343667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 268 - 438
Target Start/End: Complemental strand, 4334450 - 4334282
Alignment:
Q  268 ttttgctatttaagattgagatgtttaaaatctagactttcttatttaaccaaaaacaaatattaaaaatccagaatataaaacaaagcatatgaagttc 367  Q
    ||||||| || ||| ||||||| ||| ||||||||| |||||||||||||||||||||||| |||||| |||| ||| |||||||||| ||| |||||||    
T  4334450 ttttgcttttaaagtttgagatattttaaatctagattttcttatttaaccaaaaacaaattttaaaa-tcca-aatttaaaacaaagtataagaagttc 4334353  T
Q  368 ttacggtatgttctaacaagacatcaatcacatcctcatgaaaccacagcctactatgttcctcaggctcc 438  Q
    |||| ||||||||| |||| ||||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  4334352 ttacagtatgttctgacaatacatcaagcacatcctcatgaaaccacaacctactacgttcctcaggctcc 4334282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 193 - 442
Target Start/End: Complemental strand, 4352199 - 4351955
Alignment:
Q  193 attcacaaccaaactaatattcaaaacttctgtgctaacaacaacaaaagtgaatgttgattactagctaaatgtttttgctatttaagattgagatgtt 292  Q
    ||||||||||||||||||||| ||| ||| || |||||||||| || |  ||||||||||||||||||| ||      ||||   |||| ||||||| ||    
T  4352199 attcacaaccaaactaatattgaaagcttttgcgctaacaacagcacagatgaatgttgattactagctcaaa-----tgcttactaagtttgagatatt 4352105  T
Q  293 taaaatctagactttcttatttaaccaaaaacaaatattaaaaatccagaatataaaacaaagcatatgaagttcttacggtatgttctaacaagacatc 392  Q
    |  || | | | |||| |||||||| ||||||||||||| ||||| |||||  |||||||||| ||||||||||||||| ||||||| | |||| |||||    
T  4352104 ttcaacccaaattttcatatttaactaaaaacaaatatttaaaatacagaacttaaaacaaagtatatgaagttcttacagtatgttttgacaatacatc 4352005  T
Q  393 aatcacatcctcatgaaaccacagcctactatgttcctcaggctcctttg 442  Q
    || ||||||| | |||||||||| ||||||| ||||||||||||||||||    
T  4352004 aagcacatccccgtgaaaccacaacctactacgttcctcaggctcctttg 4351955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 295 - 438
Target Start/End: Original strand, 4125569 - 4125712
Alignment:
Q  295 aaatctagactttcttatttaaccaaaaacaaatattaaaaatccagaatataaaacaaagcatatgaagttcttacggtatgttctaacaagacatcaa 394  Q
    ||||| ||| ||||||||||||||||||||| |||||  ||||| ||||| |||||||||| ||||||| ||||||| ||||||||| |||| | |||||    
T  4125569 aaatcgagaatttcttatttaaccaaaaacagatattttaaatcaagaatttaaaacaaagtatatgaaattcttaccgtatgttctgacaatatatcaa 4125668  T
Q  395 tcacatcctcatgaaaccacagcctactatgttcctcaggctcc 438  Q
    |||||||||||||| |||||| ||||||| ||||||||||||||    
T  4125669 tcacatcctcatgataccacaacctactacgttcctcaggctcc 4125712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 295 - 438
Target Start/End: Original strand, 4322231 - 4322374
Alignment:
Q  295 aaatctagactttcttatttaaccaaaaacaaatattaaaaatccagaatataaaacaaagcatatgaagttcttacggtatgttctaacaagacatcaa 394  Q
    |||||||||  ||||||||||  |||||  ||||||| || || |||||| |||||||||| ||||||||||||||| ||||||||| |||| |||||||    
T  4322231 aaatctagatcttcttatttactcaaaataaaatatttaatattcagaatttaaaacaaagtatatgaagttcttacagtatgttctgacaatacatcaa 4322330  T
Q  395 tcacatcctcatgaaaccacagcctactatgttcctcaggctcc 438  Q
     |||||| ||||||||||||| ||||||| ||||||||||||||    
T  4322331 gcacatcatcatgaaaccacaacctactacgttcctcaggctcc 4322374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 4352383 - 4352249
Alignment:
Q  18 ctggcagcttcaaactcagcccctcaacagctttagttccctgtgaaatataaatgaccaaa-gcaaaacatcctataaagccgggaagtataatcatgt 116  Q
    |||||| ||| ||| |||| || |||||| |||| |||||||| |||||||||| ||||||| | |||||||| |||| |||| ||||| | || ||| |    
T  4352383 ctggcatcttaaaagtcagtccttcaacaacttttgttccctgagaaatataaaggaccaaaagtaaaacatcttatagagccaggaagcacaaccatat 4352284  T
Q  117 g--taaaactaaaagatataaggcagataaaaaac 149  Q
    |  ||||||||||||||||||||||||||||||||    
T  4352283 gagtaaaactaaaagatataaggcagataaaaaac 4352249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 4321937 - 4322069
Alignment:
Q  19 tggcagcttcaaactcagcccctcaacagctttagttccctgtgaaatataaatgacca-aagcaaaacatcctataaagccgggaagtataa--tcatg 115  Q
    ||||| ||||||| |||| |||||||||||||| ||||||| ||||||||||| ||||| ||  ||||||| ||| | |||  ||||| | ||   ||||    
T  4321937 tggcatcttcaaagtcagtccctcaacagcttttgttccctatgaaatataaaggaccagaattaaaacatgctacagagctaggaagcacaaccacatg 4322036  T
Q  116 tgtaaaactaaaagatataaggcagataaaaaa 148  Q
    |||||||||||||||||||||||| ||||||||    
T  4322037 tgtaaaactaaaagatataaggcaaataaaaaa 4322069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 4125342 - 4125492
Alignment:
Q  18 ctggcagcttcaaactcagcccctcaacagctttagttccc----tgtgaaatataaatgacc-aaagcaaaacatcctataaagccgggaagtataat- 111  Q
    |||||||||||||| |||| |||||||||||||| ||||||    | ||||||||||  |||| |||| ||||||| ||| | |||| ||||| | |||     
T  4125342 ctggcagcttcaaagtcagtccctcaacagcttttgttccctatatatgaaatataatggaccaaaagtaaaacatgctacacagccaggaagcacaata 4125441  T
Q  112 -catgtgtaaaactaaaagatataaggcagataaaaaacatgcaatgaaac 161  Q
      ||||||||||||||||||||  ||||||||||||||  || ||||||||    
T  4125442 atatgtgtaaaactaaaagatagtaggcagataaaaaatttgtaatgaaac 4125492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 4334646 - 4334585
Alignment:
Q  18 ctggcagcttcaaactcagcccctcaacagctttagttccctgtgaaatataaatgaccaaa 79  Q
    |||||||||||||| |||  |||||||||| ||| ||||||||||||||||||| |||||||    
T  4334646 ctggcagcttcaaagtcaatccctcaacagtttttgttccctgtgaaatataaaggaccaaa 4334585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 4334517 - 4334462
Alignment:
Q  180 gaagcacaaaatgattcacaaccaaactaatattcaaaacttctgtgctaacaaca 235  Q
    |||||||||||||||| | ||||||||||||||||||| ||| || ||||||||||    
T  4334517 gaagcacaaaatgattaataaccaaactaatattcaaagcttttgcgctaacaaca 4334462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 415
Target Start/End: Original strand, 5104065 - 5104121
Alignment:
Q  359 atgaagttcttacggtatgttctaacaagacatcaatcacatcctcatgaaaccaca 415  Q
    ||||||||||||| ||||||||| |||| |||| || |||||| |||||||||||||    
T  5104065 atgaagttcttaccgtatgttctgacaatacatgaagcacatcgtcatgaaaccaca 5104121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 415
Target Start/End: Complemental strand, 5424569 - 5424506
Alignment:
Q  352 aaagcatatgaagttcttacggtatgttctaacaagacatcaatcacatcctcatgaaaccaca 415  Q
    |||||||||||||||||||| || || ||| | || |||| || ||||||||||||||||||||    
T  5424569 aaagcatatgaagttcttacagtttgatctgataatacatgaagcacatcctcatgaaaccaca 5424506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 416
Target Start/End: Original strand, 5133086 - 5133155
Alignment:
Q  347 aaaacaaagcatatgaagttcttacggtatgttctaacaagacatcaatcacatcctcatgaaaccacag 416  Q
    ||||||||||||| ||||||||||| || |||| | | |  ||||||| ||||||||| |||||||||||    
T  5133086 aaaacaaagcataagaagttcttactgtttgttttgatagtacatcaagcacatcctcgtgaaaccacag 5133155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 5382699 - 5382658
Alignment:
Q  38 ccctcaacagctttagttccctgtgaaatataaatgaccaaa 79  Q
    |||||||||||||| ||||||| |||||||||| ||||||||    
T  5382699 ccctcaacagcttttgttccctatgaaatataattgaccaaa 5382658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 5396020 - 5395983
Alignment:
Q  180 gaagcacaaaatgattcacaaccaaactaatattcaaa 217  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  5396020 gaagcacaaaacgattcacaaccaaactaattttcaaa 5395983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 9610 - 9651
Alignment:
Q  38 ccctcaacagctttagttccctgtgaaatataaatgaccaaa 79  Q
    |||||||||||||| ||||||| |||||||||| ||||||||    
T  9610 ccctcaacagcttttgttccctatgaaatataattgaccaaa 9651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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