View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12545_low_11 (Length: 442)
Name: NF12545_low_11
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 16 - 431
Target Start/End: Original strand, 8287598 - 8288015
Alignment:
| Q |
16 |
atttatgctgtcttaatggaaaaagactggcactagacatgcatgaaagcaacccgccaggaccacacatgtaaagaaagattccttagtcccttagtga |
115 |
Q |
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| T |
8287598 |
atttatgctgtcttaatggaaaaagactggcactagacatgcatgaaagcaacccaccaggaccacacatgcaaagaaagattccttagtcctttagtga |
8287697 |
T |
|
| Q |
116 |
gttgtaaccaatttgttcattctcttatatttatacatttcccatgtgaacacaagactgcataactctgattcaagacatttaaggacttttgtttatt |
215 |
Q |
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| T |
8287698 |
gctgtaaccaatttcttcattctcttatatttatacatttcccatgtgaacacaagattgcataactctgattcaagacatttagggacttttgtttatt |
8287797 |
T |
|
| Q |
216 |
tggctctc--atgcgtgtaatgacagtcgaagatcagccacaactatgtggatcaacatccttaggcatgggtggattcggtaaatcatcgagaaggtac |
313 |
Q |
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| T |
8287798 |
tggctctcatatgcgtgcaatgacagtcgaagatcagtcacaactatgtggatcgacatccttaggcatgggtggattcggtaaaacatcgaggaggtac |
8287897 |
T |
|
| Q |
314 |
gcttttctggagtctccgaaaaccatctttaatttgtctgtaaatttcttttagtttatgttgttatctttgtttctaggaacacacaaagcaccatttc |
413 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8287898 |
gcttttctggagtttccggaaaccatctttaatttgtctgtaattttcttttagtttatgttgttatctttgtttctaggaacacacaaagcaccatttc |
8287997 |
T |
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| Q |
414 |
tacatgttgttttttcat |
431 |
Q |
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| T |
8287998 |
tacatgttgttttttcat |
8288015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 232 - 298
Target Start/End: Original strand, 8269518 - 8269584
Alignment:
| Q |
232 |
aatgacagtcgaagatcagccacaactatgtggatcaacatccttaggcatgggtggattcggtaaa |
298 |
Q |
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| T |
8269518 |
aatgacggttgaagatcggccacaactatgtggaacaacatccttggggatgggcggattcggtaaa |
8269584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 325 - 400
Target Start/End: Original strand, 37646590 - 37646665
Alignment:
| Q |
325 |
gtctccgaaaaccatctttaatttgtctgtaaatttcttttagtttatgttgttatctttgtttctaggaacacac |
400 |
Q |
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| T |
37646590 |
gtctccggaaaccatctttaatttgtctataattttcttttagtttatgttgttatctttgtttgcaggaacacac |
37646665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 1250767 - 1250825
Alignment:
| Q |
240 |
tcgaagatcagccacaactatgtggatcaacatccttaggcatgggtggattcggtaaa |
298 |
Q |
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||||||||| |||||||||||||||| |||||||||| || |||||||||||||||||| |
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| T |
1250767 |
tcgaagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaa |
1250825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 26585307 - 26585362
Alignment:
| Q |
243 |
aagatcagccacaactatgtggatcaacatccttaggcatgggtggattcggtaaa |
298 |
Q |
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|||||| |||||||||||||||| ||||| |||| || |||||||||||||||||| |
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| T |
26585307 |
aagatcggccacaactatgtggagcaacaaccttgggaatgggtggattcggtaaa |
26585362 |
T |
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