View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12545_low_12 (Length: 421)
Name: NF12545_low_12
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 414
Target Start/End: Original strand, 3217383 - 3217778
Alignment:
| Q |
19 |
cttctagtccttcatttgcagctgctaatttttggtatttatttgctgaagtttgacatatgcttagcaggagaatgaaaccaagaagcaagattggagt |
118 |
Q |
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| T |
3217383 |
cttctagtccttcatttgcagctgctaatttttggtatttatttgctgaagtttgacatatgcttagcaggagaatgaaaccaagaagcaagattggagt |
3217482 |
T |
|
| Q |
119 |
gagttccatcttgtttatgttcatgttaatttgtgtggatggtgnnnnnnncatgaaaacgggtgcttattatatagtgtggagtgagaatcatgggcat |
218 |
Q |
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| T |
3217483 |
gagttccatcttgtttatgttcatgttaatttgtgtggatggtgaaaaaaacatgaaaacgggtgcttattatatagtgtggagtgagaatcatgggcat |
3217582 |
T |
|
| Q |
219 |
gtgtgtaaatgataatcgtacatagggaattactgaagattaagggaatttagaagcaaaaatgattaaatatgataagttaattaaataaactgaggta |
318 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217583 |
gtgtgttaatgataatcgtacatagggaattactgaagattaagggaaattagaagcaaaaatgattaaatatgataagttaattaaataaactgaggta |
3217682 |
T |
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| Q |
319 |
taatttagaagtactatcattcaatataagagaagtctttaacttttgctcatattttattctaaatactataaactatttttacttatatttcat |
414 |
Q |
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| T |
3217683 |
taatttagaagtactatcattcaatataagagaagtctttaacttttgctcatattttattctaaatactataaactatttttacttatatttcat |
3217778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 3203461 - 3203587
Alignment:
| Q |
19 |
cttctagtccttcatttgcagctgctaatttttggtatttatttgctgaagtttgacatatgcttagcaggagaatgaaaccaagaagcaagattggagt |
118 |
Q |
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|||||||||||||||||| ||||| |||| ||||||||||| |||||||||| | | || ||||||| ||||||||||||| |||||| |||||||| |
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| T |
3203461 |
cttctagtccttcatttgtagctgtgaattcttggtatttatgtgctgaagttgtatagatacttagcacaagaatgaaaccaataagcaatattggagt |
3203560 |
T |
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| Q |
119 |
gagttccatcttgtttatgttcatgtt |
145 |
Q |
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|||||||||||| ||| | ||||||| |
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| T |
3203561 |
tagttccatcttggttaaggtcatgtt |
3203587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 3209435 - 3209561
Alignment:
| Q |
19 |
cttctagtccttcatttgcagctgctaatttttggtatttatttgctgaagtttgacatatgcttagcaggagaatgaaaccaagaagcaagattggagt |
118 |
Q |
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|||||||||||||||||| || || |||| ||||||||||| |||||||||| | | || ||||||| ||||||||||||| |||||| |||||||| |
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| T |
3209435 |
cttctagtccttcatttgtagttgtgaattcttggtatttatgtgctgaagttgtatagatacttagcacaagaatgaaaccaataagcaatattggagt |
3209534 |
T |
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| Q |
119 |
gagttccatcttgtttatgttcatgtt |
145 |
Q |
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|||||||||||| ||| | ||||||| |
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| T |
3209535 |
tagttccatcttggttaaggtcatgtt |
3209561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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