View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12545_low_14 (Length: 405)
Name: NF12545_low_14
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 6921768 - 6922157
Alignment:
| Q |
1 |
tgaatcgaacggtatgctattttaatatttggattcaatggttttctatctcatctcaaaatccatatatccagannnnnnnnnnnn-gacaacaatcca |
99 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6921768 |
tgaatcgaacggcatgctattttaatatttggattcaatggttttctatctcatctcaaaatccatatatccagattttattttttttgacaacaatcca |
6921867 |
T |
|
| Q |
100 |
tatacaaaaccatatactactaaacgatattcaaaatcttgccgcctagtattaattaaactaataaagccattaaattatagctaaggatgccccatcc |
199 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6921868 |
tatacaaaaccatata------aataatattcaaaatcttgccgcctagtattaattaaactaataaagccattaaattatagctaaggatgccccatcc |
6921961 |
T |
|
| Q |
200 |
tagtatgaaccacgtaagctagaaatagaatgaataaacaataccaatcatgcactcaccacaggatccacatgcaaatttgtttacaaaattaacacaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6921962 |
tagtatgaaccacgtaagctagaaatagaatgaataaacaataccaatcatgcactcaccacaggatccacatgcaaatttgtttacaaaattaacacaa |
6922061 |
T |
|
| Q |
300 |
gttgcatattgtagcttcttctaaccccttactccaaaggatagggtcttgattaattggacctttgtaggtttgccatatcattgacagcttcat |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6922062 |
gttgcatattgtagcttcttctaaccccttactccaaaggatagggtcttgattaattggacctttgtaggtttgccatatcattgacagcttcat |
6922157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University