View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12545_low_21 (Length: 370)

Name: NF12545_low_21
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12545_low_21
NF12545_low_21
[»] chr4 (12 HSPs)
chr4 (18-269)||(31883740-31883992)
chr4 (270-328)||(55986309-55986367)
chr4 (271-328)||(40169779-40169836)
chr4 (268-328)||(40168637-40168697)
chr4 (273-328)||(55984768-55984823)
chr4 (270-326)||(48157680-48157736)
chr4 (270-325)||(9178635-9178690)
chr4 (268-328)||(4433181-4433241)
chr4 (268-328)||(43793629-43793689)
chr4 (269-328)||(25011980-25012039)
chr4 (267-326)||(48157117-48157176)
chr4 (279-323)||(19909182-19909226)
[»] chr7 (3 HSPs)
chr7 (268-356)||(12961982-12962070)
chr7 (269-328)||(8527040-8527099)
chr7 (267-328)||(48175959-48176021)
[»] chr6 (6 HSPs)
chr6 (267-328)||(20409064-20409125)
chr6 (268-328)||(6977025-6977085)
chr6 (267-356)||(16859333-16859422)
chr6 (270-328)||(6978137-6978195)
chr6 (269-328)||(16864492-16864551)
chr6 (269-328)||(20410217-20410276)
[»] chr3 (12 HSPs)
chr3 (268-328)||(54539107-54539167)
chr3 (268-356)||(54539470-54539558)
chr3 (273-328)||(48053129-48053184)
chr3 (270-309)||(48060799-48060838)
chr3 (267-328)||(28173726-28173787)
chr3 (267-328)||(34878526-34878587)
chr3 (268-328)||(22447738-22447798)
chr3 (260-326)||(51315742-51315808)
chr3 (267-324)||(52281594-52281651)
chr3 (268-328)||(26628023-26628083)
chr3 (267-323)||(32960642-32960698)
chr3 (268-324)||(52276302-52276358)
[»] chr2 (10 HSPs)
chr2 (268-328)||(45413477-45413537)
chr2 (270-328)||(1389233-1389291)
chr2 (73-217)||(33476718-33476867)
chr2 (269-328)||(45412334-45412393)
chr2 (269-328)||(1394854-1394913)
chr2 (270-328)||(28851672-28851730)
chr2 (273-328)||(28847336-28847391)
chr2 (267-328)||(30714272-30714333)
chr2 (268-328)||(2986932-2986992)
chr2 (268-328)||(10851911-10851971)
[»] chr8 (5 HSPs)
chr8 (267-328)||(38612216-38612277)
chr8 (267-328)||(38613417-38613478)
chr8 (267-356)||(23039499-23039588)
chr8 (269-328)||(23039123-23039182)
chr8 (268-328)||(4807598-4807658)
[»] chr5 (9 HSPs)
chr5 (269-326)||(8061855-8061912)
chr5 (267-326)||(8067452-8067511)
chr5 (270-322)||(17415695-17415747)
chr5 (267-326)||(24242014-24242073)
chr5 (270-328)||(17414544-17414602)
chr5 (267-326)||(14190489-14190548)
chr5 (270-326)||(14189664-14189720)
chr5 (267-328)||(31055312-31055373)
chr5 (268-328)||(18695248-18695308)
[»] chr1 (9 HSPs)
chr1 (268-328)||(46313274-46313334)
chr1 (267-326)||(50379974-50380033)
chr1 (267-328)||(2425469-2425530)
chr1 (271-328)||(43706655-43706712)
chr1 (270-326)||(46312065-46312121)
chr1 (268-328)||(46432214-46432274)
chr1 (269-328)||(4059521-4059580)
chr1 (267-328)||(28920897-28920958)
chr1 (267-328)||(51719120-51719181)
[»] scaffold0025 (1 HSPs)
scaffold0025 (269-328)||(62064-62123)
[»] scaffold0419 (1 HSPs)
scaffold0419 (270-328)||(2961-3019)
[»] scaffold1875 (1 HSPs)
scaffold1875 (268-328)||(754-814)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 31883740 - 31883992
Alignment:
Q  18 cttactcctgcagctggtcccaacaaatgaataatgagtttcggttgcagttgcaggacttcatttgtctcaaatacgattgtcaaatgcatcaattttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31883740 cttactcctgcagctggtcccaacaaatgaataatgagtttcggttgcagttgcaggacttcatttgtctcaaatacgattgtcaaatgcatcaattttg 31883839  T
Q  118 cttttgggagctcggttctggtaatataaatgacgcttcagtgatggttatcaactggtcttcggatgca-agaggattttgatttcatgagcatagttt 216  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31883840 cttttgggagttcggttctggtaatataaatgaagcttcagtgatggttatcaactggtcttcggatgcagagaggattttgatttcatgagcatagttt 31883939  T
Q  217 tttagtaataatagtttgcccaatgatggatattttgttttgtttatttgtta 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31883940 tttagtaataatagtttgcccaatgatggatattttgttttgtttgtttgtta 31883992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 328
Target Start/End: Complemental strand, 55986367 - 55986309
Alignment:
Q  270 ggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  55986367 ggctaaactgcagttttaaccccctaactttcacaatggtgcgattttgaccccctatt 55986309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 271 - 328
Target Start/End: Complemental strand, 40169836 - 40169779
Alignment:
Q  271 gctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  40169836 gctaaactgcagttttgaccccctaactttcacaatggtgcgattttggccccctatt 40169779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 40168637 - 40168697
Alignment:
Q  268 taggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||    
T  40168637 taggctaaactgcagttttgaccccctaacttttacaatggtgcgattttggccccctatt 40168697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 273 - 328
Target Start/End: Original strand, 55984768 - 55984823
Alignment:
Q  273 taaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||    
T  55984768 taaactgcagttttaaccccctaactttcacaatggtgcgattttgaccccttatt 55984823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 48157736 - 48157680
Alignment:
Q  270 ggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggcccccta 326  Q
    ||||||||||||||||| |||||||| |||||| || ||||||||||||||||||||    
T  48157736 ggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggcccccta 48157680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 325
Target Start/End: Original strand, 9178635 - 9178690
Alignment:
Q  270 ggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccct 325  Q
    ||||||||||||||||| ||| |||| |||||| || |||||||||||||||||||    
T  9178635 ggctaaactgcagttttgacctcctaactttcataaaggtgcgattttggccccct 9178690  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 4433181 - 4433241
Alignment:
Q  268 taggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    |||||||||||||| ||||  |||||||| ||||| |||| ||||||||||||||| ||||    
T  4433181 taggctaaactgcacttttcgccccctatgtttcataatgttgcgattttggccccttatt 4433241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 43793629 - 43793689
Alignment:
Q  268 taggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    |||||||||||||| ||||  |||||||| ||| | |||| ||||||||||||||||||||    
T  43793629 taggctaaactgcacttttcgccccctatgttttaaaatgttgcgattttggccccctatt 43793689  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 328
Target Start/End: Complemental strand, 25012039 - 25011980
Alignment:
Q  269 aggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||||||||| ||||  |||||||| ||||| |||| ||| ||||||||||||||||    
T  25012039 aggctaaactgcacttttcgccccctatgtttcataatgttgcaattttggccccctatt 25011980  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 48157117 - 48157176
Alignment:
Q  267 ttaggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggcccccta 326  Q
    |||||||||||||||||||| |||||||| |||||| || |||  ||||||| |||||||    
T  48157117 ttaggctaaactgcagttttgaccccctaactttcataaaggtatgattttgacccccta 48157176  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 19909182 - 19909226
Alignment:
Q  279 gcagttttaaccccctatctttcacaatggtgcgattttggcccc 323  Q
    ||||||||||||||||| ||||| ||| | |||||||||||||||    
T  19909182 gcagttttaaccccctaactttctcaaagttgcgattttggcccc 19909226  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 12961982 - 12962070
Alignment:
Q  268 taggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctattgnnnnnnnttaaattttaaacccctatg 356  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  12961982 taggctaaactgcagttttaaccccctaactttcacaatggtgcgattttggccccctattaaaaaaaattaaattttaaacccctatg 12962070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 328
Target Start/End: Complemental strand, 8527099 - 8527040
Alignment:
Q  269 aggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    |||||||| |||| ||||  |||||||| ||||| |||| ||||||||||||||||||||    
T  8527099 aggctaaagtgcacttttcgccccctatatttcaaaatgttgcgattttggccccctatt 8527040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 328
Target Start/End: Original strand, 48175959 - 48176021
Alignment:
Q  267 ttaggctaaactgcagttttaa-ccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||||||||||| ||||   |||||||| ||||| |||| ||||||||||||||||||||    
T  48175959 ttaggctaaactgcactttttcgccccctatgtttcataatgttgcgattttggccccctatt 48176021  T

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Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 267 - 328
Target Start/End: Original strand, 20409064 - 20409125
Alignment:
Q  267 ttaggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  20409064 ttaggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggccccctatt 20409125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 6977025 - 6977085
Alignment:
Q  268 taggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  6977025 taggctaaactgcagttttaaccccctaactttcacaatggtgcaattttggccccctatt 6977085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 267 - 356
Target Start/End: Original strand, 16859333 - 16859422
Alignment:
Q  267 ttaggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctattgnnnnnnnttaaattttaaacccctatg 356  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||        ||||||||||||||||||||    
T  16859333 ttaggctaaactgcaattttaaccccctaactttcacaatggtgcgattttgaccccctattaaaaaaaattaaattttaaacccctatg 16859422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 328
Target Start/End: Complemental strand, 6978195 - 6978137
Alignment:
Q  270 ggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  6978195 ggctaaactgcagttttaaccccctaactttcacaatggtgcgattttggctccctatt 6978137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 269 - 328
Target Start/End: Complemental strand, 16864551 - 16864492
Alignment:
Q  269 aggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||    
T  16864551 aggctaaactgcagttttaaccccctaacttttacaatggtgcgattttggtcccctatt 16864492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 269 - 328
Target Start/End: Complemental strand, 20410276 - 20410217
Alignment:
Q  269 aggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    |||||||||||||||||| |||||||| |||| ||||||||||||||||| |||||||||    
T  20410276 aggctaaactgcagttttgaccccctaacttttacaatggtgcgattttgaccccctatt 20410217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 54539107 - 54539167
Alignment:
Q  268 taggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  54539107 taggctaaactgcagttttaaccccctaactttcacaatggtgtgattttggccccctatt 54539167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 356
Target Start/End: Complemental strand, 54539558 - 54539470
Alignment:
Q  268 taggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctattgnnnnnnnttaaattttaaacccctatg 356  Q
    ||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||        ||||||||||||||||||||    
T  54539558 taggctaaactgcagttttaaccccttaactttgacaatggtgcgattttggccccctattaaaaaaaattaaattttaaacccctatg 54539470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 273 - 328
Target Start/End: Original strand, 48053129 - 48053184
Alignment:
Q  273 taaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  48053129 taaactgcagttttaaccctctaactttcacaatggtgcgattttggccccctatt 48053184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 309
Target Start/End: Complemental strand, 48060838 - 48060799
Alignment:
Q  270 ggctaaactgcagttttaaccccctatctttcacaatggt 309  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  48060838 ggctaaactgcagttttaaccccctaactttcacaatggt 48060799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 328
Target Start/End: Original strand, 28173726 - 28173787
Alignment:
Q  267 ttaggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    |||||||||| |||| ||||  |||||||| ||||| |||| ||||||||||||||||||||    
T  28173726 ttaggctaaagtgcacttttcgccccctatgtttcataatgttgcgattttggccccctatt 28173787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 328
Target Start/End: Original strand, 34878526 - 34878587
Alignment:
Q  267 ttaggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||||||||||| || |  |||||||| ||||| |||| ||||||||||||||||||||    
T  34878526 ttaggctaaactgcacttctcgccccctatgtttcaaaatgttgcgattttggccccctatt 34878587  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 22447738 - 22447798
Alignment:
Q  268 taggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    |||||||||||||| ||||  |||||||| ||||| |||| ||| ||||||||||||||||    
T  22447738 taggctaaactgcacttttcgccccctatgtttcaaaatgttgcaattttggccccctatt 22447798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 51315808 - 51315742
Alignment:
Q  260 ttatttgttaggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggcccccta 326  Q
    |||||| ||||||| ||  ||||||||| ||||||| ||||| ||| | ||||||||||||||||||    
T  51315808 ttattttttaggcttaatagcagttttagccccctaactttcccaaagttgcgattttggcccccta 51315742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 324
Target Start/End: Complemental strand, 52281651 - 52281594
Alignment:
Q  267 ttaggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccc 324  Q
    |||||||||| |||| ||||  |||||||||||||| || | ||||||||||||||||    
T  52281651 ttaggctaaagtgcacttttccccccctatctttcaaaacgttgcgattttggccccc 52281594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 26628023 - 26628083
Alignment:
Q  268 taggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||||||| || ||||  |||||||| ||||| |||| ||| ||||||||||||||||    
T  26628023 taggctaaactacacttttcgccccctatgtttcaaaatgttgcaattttggccccctatt 26628083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 32960642 - 32960698
Alignment:
Q  267 ttaggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggcccc 323  Q
    ||||||||||||||| ||||  |||||||| ||||| |||| ||| |||||||||||    
T  32960642 ttaggctaaactgcatttttcgccccctatgtttcaaaatgttgcaattttggcccc 32960698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 52276302 - 52276358
Alignment:
Q  268 taggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccc 324  Q
    ||||||||| |||| ||||  |||||||||||||| || | ||||||||||||||||    
T  52276302 taggctaaagtgcacttttccccccctatctttcaaaacgttgcgattttggccccc 52276358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 45413537 - 45413477
Alignment:
Q  268 taggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  45413537 taggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggccccctatt 45413477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 1389233 - 1389291
Alignment:
Q  270 ggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  1389233 ggctaaactgcagttttaaccccctaactttcagaatggtgcgattttggccccctatt 1389291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 73 - 217
Target Start/End: Complemental strand, 33476867 - 33476718
Alignment:
Q  73 ggacttcatttgtctcaaatacgattgtcaaatgcatcaattttgcttttgggagctcggttctggtaatataaatgacgcttcagtgatggtt-----a 167  Q
    ||||||||||||||||| ||| ||||||||||| |||||||| | |||||||||  || ||||||||||||||||||| |||||||| ||||||     |    
T  33476867 ggacttcatttgtctcagatatgattgtcaaat-catcaattatacttttgggaattctgttctggtaatataaatgaagcttcagttatggtttgttta 33476769  T
Q  168 tcaactggtcttcggatgca-agaggattttgatttcatgagcatagtttt 217  Q
    ||| |||||||| |||| |  ||| |||||||||||  |||||||||||||    
T  33476768 tcagctggtctttggatacggagatgattttgatttgttgagcatagtttt 33476718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 269 - 328
Target Start/End: Original strand, 45412334 - 45412393
Alignment:
Q  269 aggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||    
T  45412334 aggctaaactgcagttttgaccccctaactttcacaatggtgcgattttgaccccctatt 45412393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 269 - 328
Target Start/End: Complemental strand, 1394913 - 1394854
Alignment:
Q  269 aggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||| ||||||||||||||||||| |||||| |||||||||||||| ||||||||||    
T  1394913 aggctaatctgcagttttaaccccctaactttcagaatggtgcgattttagccccctatt 1394854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 328
Target Start/End: Complemental strand, 28851730 - 28851672
Alignment:
Q  270 ggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||||||| |||||||||    
T  28851730 ggctaaactgcagttttgaccccctaactttcacaatgttgcgattttgaccccctatt 28851672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 328
Target Start/End: Original strand, 28847336 - 28847391
Alignment:
Q  273 taaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    |||||||||||||| ||||||||  |||||||||| ||| ||||||| ||||||||    
T  28847336 taaactgcagttttgaccccctaattttcacaatgttgcaattttggtcccctatt 28847391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 328
Target Start/End: Original strand, 30714272 - 30714333
Alignment:
Q  267 ttaggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    |||||||||| |||| ||||  |||||||| ||| | |||| ||||||||||||||||||||    
T  30714272 ttaggctaaagtgcacttttcgccccctatgttttaaaatgttgcgattttggccccctatt 30714333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 2986992 - 2986932
Alignment:
Q  268 taggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||||| |||| |||| || | |||| ||||| |||| ||||||||||||||||||||    
T  2986992 taggctaaagtgcacttttcactctctatgtttcaaaatgttgcgattttggccccctatt 2986932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 10851911 - 10851971
Alignment:
Q  268 taggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||||||| ||||||| |||||||| ||||  ||||| |||||||||  |||||||||    
T  10851911 taggctaaactacagttttgaccccctaactttatcaatgttgcgattttaaccccctatt 10851971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 267 - 328
Target Start/End: Original strand, 38612216 - 38612277
Alignment:
Q  267 ttaggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  38612216 ttaggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggccccctatt 38612277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 267 - 328
Target Start/End: Complemental strand, 38613478 - 38613417
Alignment:
Q  267 ttaggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  38613478 ttaggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggccccctatt 38613417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 267 - 356
Target Start/End: Complemental strand, 23039588 - 23039499
Alignment:
Q  267 ttaggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctattgnnnnnnnttaaattttaaacccctatg 356  Q
    |||||||||||||||||||||||||| || |||| |||||||||||||||||| ||||||||        ||||||||||||||||||||    
T  23039588 ttaggctaaactgcagttttaaccccttaactttgacaatggtgcgattttggtcccctattaaaaaaaattaaattttaaacccctatg 23039499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 269 - 328
Target Start/End: Original strand, 23039123 - 23039182
Alignment:
Q  269 aggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    |||||||| |||||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  23039123 aggctaaattgcagttttaaccccctaactttcacaatggtgtaattttggccccctatt 23039182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 4807598 - 4807658
Alignment:
Q  268 taggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    |||||||||||||| ||||  || ||||| ||||| |||| ||| ||||||||||||||||    
T  4807598 taggctaaactgcacttttcgcctcctatgtttcaaaatgttgcaattttggccccctatt 4807658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 269 - 326
Target Start/End: Original strand, 8061855 - 8061912
Alignment:
Q  269 aggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggcccccta 326  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  8061855 aggctaaactgcagttttaaccccctaactttcagaatggtgcgattttggcccccta 8061912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 8067511 - 8067452
Alignment:
Q  267 ttaggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggcccccta 326  Q
    ||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||    
T  8067511 ttaggctaaactgcagttttacccccctaactttcagaatggtgcgattttggcccccta 8067452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 270 - 322
Target Start/End: Complemental strand, 17415747 - 17415695
Alignment:
Q  270 ggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccc 322  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  17415747 ggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggccc 17415695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 24242014 - 24242073
Alignment:
Q  267 ttaggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggcccccta 326  Q
    |||||||||||||||||||| |||||||| ||||||||| |||||||||||| |||||||    
T  24242014 ttaggctaaactgcagttttgaccccctaactttcacaaaggtgcgattttgacccccta 24242073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 17414544 - 17414602
Alignment:
Q  270 ggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||    
T  17414544 ggctaaactgcagttttgaccctctaacttttacaatggtgcgattttggccccctatt 17414602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 14190548 - 14190489
Alignment:
Q  267 ttaggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggcccccta 326  Q
    |||||||||||||||||||| |||||||| |||||| || ||||||||||||| ||||||    
T  14190548 ttaggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtccccta 14190489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 14189664 - 14189720
Alignment:
Q  270 ggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggcccccta 326  Q
    ||||||||||||||||| |||||||| |||||| || ||||||||||||| ||||||    
T  14189664 ggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtccccta 14189720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 328
Target Start/End: Original strand, 31055312 - 31055373
Alignment:
Q  267 ttaggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||||||||||| ||||  |||||||| ||||| |||| ||| ||||||||||||||||    
T  31055312 ttaggctaaactgcacttttcgccccctatgtttcataatgttgcaattttggccccctatt 31055373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 18695308 - 18695248
Alignment:
Q  268 taggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||||| |||| ||||  |||||||| ||||| |||  ||||||||||||||||||||    
T  18695308 taggctaaagtgcacttttcgccccctatgtttcaaaatattgcgattttggccccctatt 18695248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 46313334 - 46313274
Alignment:
Q  268 taggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||    
T  46313334 taggctaaactgcagttttgaccccctaactttcacaaaggtgcgattttggccccctatt 46313274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 50380033 - 50379974
Alignment:
Q  267 ttaggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggcccccta 326  Q
    |||||||||||||||||||| |||||||| |||||| || ||||||||||||| ||||||    
T  50380033 ttaggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtccccta 50379974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 328
Target Start/End: Complemental strand, 2425530 - 2425469
Alignment:
Q  267 ttaggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||||||||||| ||||  |||||||| ||||| |||| ||||||||||||||||||||    
T  2425530 ttaggctaaactgcactttttgccccctatgtttcataatgttgcgattttggccccctatt 2425469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 328
Target Start/End: Original strand, 43706655 - 43706712
Alignment:
Q  271 gctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||||||| ||||  |||||||| ||||| |||| ||||||||||||||||||||    
T  43706655 gctaaactgcacttttcgccccctatgtttcataatgttgcgattttggccccctatt 43706712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 46312065 - 46312121
Alignment:
Q  270 ggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggcccccta 326  Q
    ||||||||| ||||||| |||||||| ||||  ||||| ||||||||||||||||||    
T  46312065 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 46312121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 46432214 - 46432274
Alignment:
Q  268 taggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||||| |||| ||||  |||||||| ||||| |||| ||||||||||||||||||||    
T  46432214 taggctaaagtgcacttttcgccccctatgtttcataatgttgcgattttggccccctatt 46432274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 328
Target Start/End: Original strand, 4059521 - 4059580
Alignment:
Q  269 aggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    |||||||| |||| ||||  |||||||| ||||| |||| ||||||||||||||||||||    
T  4059521 aggctaaagtgcacttttcgccccctatgtttcaaaatgttgcgattttggccccctatt 4059580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 328
Target Start/End: Complemental strand, 28920958 - 28920897
Alignment:
Q  267 ttaggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    |||||||||||| || ||||  |||||||  ||||| |||| ||||||||||||||||||||    
T  28920958 ttaggctaaacttcacttttcgccccctaagtttcaaaatgttgcgattttggccccctatt 28920897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 328
Target Start/End: Original strand, 51719120 - 51719181
Alignment:
Q  267 ttaggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||||||||||| ||||  ||| |||| ||||| |||| ||| ||||||||||||||||    
T  51719120 ttaggctaaactgcacttttcgccctctatgtttcataatgttgcaattttggccccctatt 51719181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 328
Target Start/End: Complemental strand, 62123 - 62064
Alignment:
Q  269 aggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||||||||| |||| ||||||||| ||||| |||| ||| ||||||||||| ||||    
T  62123 aggctaaactgcatttttcaccccctatgtttcaaaatgttgcaattttggccccgtatt 62064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 2961 - 3019
Alignment:
Q  270 ggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
    ||||||| |||| ||||  |||||||| ||||| |||| ||||||||||||||||||||    
T  2961 ggctaaagtgcacttttcgccccctatgtttcaaaatgttgcgattttggccccctatt 3019  T

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Target: scaffold1875 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1875
Description:

Target: scaffold1875; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 754 - 814
Alignment:
Q  268 taggctaaactgcagttttaaccccctatctttcacaatggtgcgattttggccccctatt 328  Q
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T  754 taggctaaactgcacttttcaccccttaagtttcgaaatgttgcgattttggccccctatt 814  T

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