View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12545_low_23 (Length: 365)
Name: NF12545_low_23
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 39082392 - 39082739
Alignment:
| Q |
1 |
ttgttttgacggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatatgacacgtcataacaaagttatgctctttggtcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39082392 |
ttgttttgacggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatatgacacgtcataacaaagttatgctctttggtcat |
39082491 |
T |
|
| Q |
101 |
agtgattcctatgaaggggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggggaagaatgccaaggttcgtaaattagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39082492 |
agtgattcctatgaaggggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggggaagaatgccaaggtttgtaaattagt |
39082591 |
T |
|
| Q |
201 |
taatttttctctgccacaataattaagccctacttgccatttgttatatatttttactctttatttcgagagattagtcctaacagtttgaatatttttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39082592 |
taatttttctctgccacaataattaagccctacttgccatttgttatatatttttactctttattttgagagattagtcctaacagtttgaatatttttc |
39082691 |
T |
|
| Q |
301 |
tacacaaatgttgcaggtgcaggttcggatactttcacgtggtcaaca |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39082692 |
tacacaaatgttgcaggtgcaggttcggatactttcatgtggtcaaca |
39082739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 31727029 - 31727362
Alignment:
| Q |
1 |
ttgttttgacggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatatgacacgtcataacaaagttatgctctttggtcat |
100 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31727029 |
ttgttttgatggtttcattgatgttgttcatggatcaacggctgttactatttctaataattatatgacccgtcataacaaagttatgctctttggtcat |
31727128 |
T |
|
| Q |
101 |
agtgattcctatgaaggggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggggaagaatgccaaggttcgtaaattagt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
31727129 |
agtgattcctatgaagaggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggggaagaatgccaaggtaggtttattagt |
31727228 |
T |
|
| Q |
201 |
taatttttctctgccacaataattaagccctacttgccatttgttatatatttttactctttatttcgagagattagtcctaacagtttgaatatttttc |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||| |
|
|
| T |
31727229 |
taatttttctctgccacagtaattaagccctacttgccatttgttatatatttttactc--------------ttattcctaacagtttgaaattttttc |
31727314 |
T |
|
| Q |
301 |
tacacaaatgttgcaggtgcaggttcggatactttcacgtggtcaaca |
348 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||| ||||| |||| |
|
|
| T |
31727315 |
tacacgaatgttgcagatgcaggttcggatactttcatgtggtgaaca |
31727362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 39075959 - 39076048
Alignment:
| Q |
17 |
attgatgttgttcatggatcaacggctgttactatttctaataattatatgacacgtcataacaaagttatgctctttggtcatagtgat |
106 |
Q |
| |
|
||||||||| |||||||||| || ||| |||||||||||||||||| ||||| | |||||| || |||||||| || |||||||||||| |
|
|
| T |
39075959 |
attgatgttattcatggatctacagctattactatttctaataatttcatgactcatcataataaggttatgcttttgggtcatagtgat |
39076048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 7593424 - 7593253
Alignment:
| Q |
17 |
attgatgttgttcatggatcaacggctgttactatttctaataattatatgacacgtcataacaaagttatgctctttggtcatagtgattcctatgaag |
116 |
Q |
| |
|
||||||||| | |||||||| | ||| |||||||||| ||||| |||||||| | |||| ||||||||||||| || || ||||||||||| ||| | |
|
|
| T |
7593424 |
attgatgttatacatggatctaatgctattactatttcaaataactatatgactcatcatgacaaagttatgcttttgggacatagtgattcttatacac |
7593325 |
T |
|
| Q |
117 |
gggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggggaagaatgccaaggt |
188 |
Q |
| |
|
||||| | ||||||| |||||| |||||||| |||||||| |||||||||| |||||||||||||| |
|
|
| T |
7593324 |
aagacaaggacatgcaagttactattgcttttaatcattttggtgaagggcttgtccaaagaatgccaaggt |
7593253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University