View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12545_low_24 (Length: 355)
Name: NF12545_low_24
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 55708416 - 55708094
Alignment:
| Q |
18 |
acctgcaacttttgcttgtggtttgcagcttgaagaaaacccctgcagaagaaagggttactcgctatgggtaaaaagtgtttgaatttatccactgata |
117 |
Q |
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| T |
55708416 |
acctgcaacttttgcttgtggtttgcagcttgaagaaaacccctgcagaagaaagggttacgcgctatgggtaaaaagtgtttgaatttatccactgata |
55708317 |
T |
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| Q |
118 |
gcaaactacccgttatgtaattattttgctcattatttattgcnnnnnnnaaactggaatttattgttgttaagaacataattatgtttctgccaccaac |
217 |
Q |
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| T |
55708316 |
gcaaactacccgttatgtaattattttgctcattatttattgctttttttaaactggaatatattgtttttaaggacataattatgtttctgccaccaac |
55708217 |
T |
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| Q |
218 |
gtttgtggaagcagaacacaaagtagttgaagatcattcctgtcaatagcggcctgcaatattagtaggagttgcaggtggcattccagcaaaaccataa |
317 |
Q |
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| T |
55708216 |
gtttgtggaagcagaacacaaagtagttgaagatcattcctctcaatagcggcctgcaatattagtaggagttgcaggtggcattccagcaaaaccataa |
55708117 |
T |
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| Q |
318 |
gatataactggtatgtttatcag |
340 |
Q |
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| T |
55708116 |
gatataactggtatgtttatcag |
55708094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 190 - 340
Target Start/End: Complemental strand, 56046937 - 56046786
Alignment:
| Q |
190 |
agaacataattatgtttctgccaccaacgtttgtggaagcagaacacaaagtagttgaagatcattcctgtcaatag-cggcctgcaatattagtaggag |
288 |
Q |
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| T |
56046937 |
agaacataattatatttctgccaccaacgtttgtggaagcggaacacaaagtagttgaagatcattccggtcaatagccagcttgcaatgttagttggag |
56046838 |
T |
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| Q |
289 |
ttgcaggtggcattccagcaaaaccataagatataactggtatgtttatcag |
340 |
Q |
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| T |
56046837 |
ttgcaggtggcattccagcaaaaccataagatataactggtatgtttatcag |
56046786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 191 - 336
Target Start/End: Complemental strand, 47295145 - 47294994
Alignment:
| Q |
191 |
gaacataattatgtttctgccaccaacgtttgtggaagcagaacacaaagtagttgaagatcattcctgtcaatag--cggcctgcaatatta----gta |
284 |
Q |
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||||||| |||| |||||||||||||||||| ||||||| |||||||||| ||||||||||||||||| ||||||| |||||| | ||| ||| |
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| T |
47295145 |
gaacatagttatatttctgccaccaacgtttttggaagcggaacacaaagcagttgaagatcattcctatcaataggataccctgcattgttagtatgta |
47295046 |
T |
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| Q |
285 |
ggagttgcaggtggcattccagcaaaaccataagatataactggtatgttta |
336 |
Q |
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| T |
47295045 |
ggagttgcacgtggcattccagcaaaactgtaagatataactggtatgttta |
47294994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 49444132 - 49443986
Alignment:
| Q |
22 |
gcaacttttgcttgtggtttgcagcttgaagaaaacccctgcagaagaaaggg-------ttactcgctatgggtaaaaa-gtgtttgaatttatccact |
113 |
Q |
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|||||||||||||||| |||||||||||||||||| |||| | ||| |||||| ||||||| |||||||||||| | |||||||||||| |||| |
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| T |
49444132 |
gcaacttttgcttgtgatttgcagcttgaagaaaaaccctacggaaaaaagggggtgaaattactcgttatgggtaaaaaagagtttgaatttattcact |
49444033 |
T |
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| Q |
114 |
gatagcaaactacccgttatgtaattattttgctcattatttattgc |
160 |
Q |
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| T |
49444032 |
aatagcaaactactcattatttaattcttttgatcattatttattgc |
49443986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 192 - 328
Target Start/End: Original strand, 35802360 - 35802497
Alignment:
| Q |
192 |
aacataattatgtttctgccaccaacgtttgtggaagcagaacacaaagtagttgaagatcattcctgtcaatagcggcct-gcaatattagtaggagtt |
290 |
Q |
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|||||||||||||| ||| | | ||||||||||||||| |||||||||||||||||||||||||| || || || ||| |||| |||||||||||| |
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| T |
35802360 |
aacataattatgttcctgtcgctaacgtttgtggaagcggaacacaaagtagttgaagatcattctggtgaaaggccaccttgcaaagttagtaggagtt |
35802459 |
T |
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| Q |
291 |
gcaggtggcattccagcaaaaccataagatataactgg |
328 |
Q |
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| T |
35802460 |
gcaggtggcattccagcaaaaccataagatataactgg |
35802497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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