View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12545_low_26 (Length: 322)
Name: NF12545_low_26
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 34658406 - 34658720
Alignment:
| Q |
1 |
gtgattccaaccggattatttgtgaatttacggacgattgggacgaatacgcgttcataaagaattactcctgccatcatggttacaacactgaaaactg |
100 |
Q |
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| T |
34658406 |
gtgattccaaccggattatttgtgaatttacggacgattgggatgaatacgcgttcataaagaattactcctgccatcatggttacaacactgaaaactg |
34658505 |
T |
|
| Q |
101 |
acatgttggctggtgaaatttgaaatgtgggagagaggtgacggtccattgttcgagcttgttcgatgacgaaactaggaaggtgtgctgacgcagctat |
200 |
Q |
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| T |
34658506 |
acatgttggctggtgaaatttgaaatgtgtgagagaggtgacggtccattgttcgagcttgttcgatgacgaaactaggaaggtgtgctgaggcagctat |
34658605 |
T |
|
| Q |
201 |
aagtaaaattcctgatgctgaaattggaaggattctgatgatggattttaactcctcaactctatggacagtggctaatttccaaaagtttgatggtgca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34658606 |
aagtaaaattcctgatgctgaaattggaaggattctgatgatggattttaactcctcaactctatggacagtggctaatttccaaaagtttgatggtgca |
34658705 |
T |
|
| Q |
301 |
tttggttctgtgctc |
315 |
Q |
| |
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||||||||||||||| |
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| T |
34658706 |
tttggttctgtgctc |
34658720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 34665079 - 34665370
Alignment:
| Q |
1 |
gtgattccaaccggattatttgtgaatttacggacgattgggacgaatacgcgttcataaagaattactcctgccatcatggttacaacactgaaaactg |
100 |
Q |
| |
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||||||||| | ||||| ||||||||| |||||| || ||| ||||||| |||||| || ||||| || |||| ||||||||||| || ||||||| || |
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| T |
34665079 |
gtgattccagcaggattctttgtgaatctacggatgaatggaacgaataagcgttcgtatagaataacacctgtcatcatggttagcacgctgaaaattg |
34665178 |
T |
|
| Q |
101 |
acatgttggctggtgaaatttgaaatgtgggagagaggtgacggtccattgttcgagcttgttcgatgacgaaactaggaaggtgtgctgacgcagctat |
200 |
Q |
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||| |||| |||||||||| |||||| ||||||||||||| |||||||| ||||||||| | || || |||||| | | || ||| |||| ||| |
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| T |
34665179 |
ccatactggccggtgaaatttcgaatgtgtgagagaggtgacgatccattgtacgagcttgtacaatcacaaaactatgttgagatgatgatgcagttat |
34665278 |
T |
|
| Q |
201 |
aagtaaaattcctgatgctgaaattggaaggattctgatgatggattttaactcctcaactctatggacagtggctaatttccaaaagtttg |
292 |
Q |
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|||| |||||||||||| |||||||||| ||||| | | | |||||||||| ||||||||||||||||||||||| ||||| ||||||| |
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| T |
34665279 |
gagtagaattcctgatgcccaaattggaagcattctaaccaggcattttaactcttcaactctatggacagtggctaagttccataagtttg |
34665370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 34645379 - 34645682
Alignment:
| Q |
1 |
gtgattccaaccggattatttgtgaatttacggacgattgggacgaatacgcgttcataaagaattactcctgccatcatggttacaacactgaaaactg |
100 |
Q |
| |
|
||||||||| | ||||| ||||||||| ||||| ||| ||| ||||| | ||||||||| || || |||||| ||||||||||| |||| |||| || |
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| T |
34645379 |
gtgattccagcaggattctttgtgaatctacgggcgaatggaacgaaaaagcgttcatatagcataactcctatcatcatggttaggacaccaaaaattg |
34645478 |
T |
|
| Q |
101 |
acatgttggctggtgaaatttgaaatgtgggagagaggtgacggtccattgttcgagcttgttcgatgacgaaactaggaaggtgtgctgacgcagctat |
200 |
Q |
| |
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|||| |||||||||| |||||| |||| ||| ||||||||||||||| | |||||||||| ||||| |||||| | |||| ||| | ||| |
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| T |
34645479 |
acatattggctggtgcaatttggaatgaatgagtgaggtgacggtccatcgaacgagcttgttgaatgacaaaactacctaaatgtgatgaagacattat |
34645578 |
T |
|
| Q |
201 |
aagtaaaattcctgatgctgaaattggaaggattctgatgatggattttaactcctcaactctatggacagtggctaatttccaaaagtttgatggtgca |
300 |
Q |
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|| ||||||||||| || |||||||||| ||||||||||| | ||| | ||||||||||||||||||||| |||| ||||||| ||||| ||||||| |
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| T |
34645579 |
gagcaaaattcctgaagcccaaattggaagcattctgatgatagctttcagttcctcaactctatggacagtgactaaattccaaaggtttggtggtgca |
34645678 |
T |
|
| Q |
301 |
tttg |
304 |
Q |
| |
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|||| |
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|
| T |
34645679 |
tttg |
34645682 |
T |
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