View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12545_low_33 (Length: 270)
Name: NF12545_low_33
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 21 - 260
Target Start/End: Complemental strand, 10170776 - 10170537
Alignment:
| Q |
21 |
tcggtaccataaacaattaagggtcctttgcgtgatatatatcgcctattcctcatcttcccctttccgggtcgaatcccaaggctatccttggcctttt |
120 |
Q |
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| T |
10170776 |
tcggtaccataaacaattaagggtcctttgcgtgatatatatcgcctattcctcatcttcccctttccgggtcgaatcccaaggctatccttggccttct |
10170677 |
T |
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| Q |
121 |
cagcatcagcaaaagcaccaacctgcttcaaaaccttaatagcctccttagttttctctactccttcagcagcatcaccaacaacaagaggaaactctgg |
220 |
Q |
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| T |
10170676 |
cagcatcagcaaaagcaccaacctgcttcaaaaccttaatagcctccttagttttctctactccttcagcagcatcaccaacaacaagaggaaactctgg |
10170577 |
T |
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| Q |
221 |
aacagtctcagtcctatgaccacgagcaagaaccagtgaa |
260 |
Q |
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| T |
10170576 |
aacagtctcaatcctatgaccgcgagcaagaaccaatgaa |
10170537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 90 - 256
Target Start/End: Complemental strand, 17027404 - 17027238
Alignment:
| Q |
90 |
ggtcgaatcccaaggctatccttggccttttcagcatcagcaaaagcaccaacctgcttcaaaaccttaatagcctccttagttttctctactccttcag |
189 |
Q |
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|||||||||||||| || | || || || ||||||||||||||||| |||| || ||||||||| ||||||| |||||||||||||| |||||||||| |
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| T |
17027404 |
ggtcgaatcccaagactcgctttcgctttctcagcatcagcaaaagctccaatcttcttcaaaacactaatagcttccttagttttctcaactccttcag |
17027305 |
T |
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| Q |
190 |
cagcatcaccaacaacaagaggaaactctggaacagtctcagtcctatgaccacgagcaagaaccag |
256 |
Q |
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| | |||||||||||||||||||||||| |||||||| ||| |||||||||||||||| |||||||| |
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| T |
17027304 |
ctgaatcaccaacaacaagaggaaactcaggaacagtttcaatcctatgaccacgagctagaaccag |
17027238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 260
Target Start/End: Original strand, 28814428 - 28814592
Alignment:
| Q |
96 |
atcccaaggctatccttggccttttcagcatcagcaaaagcaccaacctgcttcaaaaccttaatagcctccttagttttctctactccttcagcagcat |
195 |
Q |
| |
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||||||||||||||||| ||||| |||||||||| |||| |||| ||||||| ||| || || |||||||| ||||| || |||||||| | || |
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| T |
28814428 |
atcccaaggctatccttcgccttctcagcatcagggtaagctccaattgatttcaaaagcttgatcgcttccttagtcttctcaacaccttcagcggaat |
28814527 |
T |
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| Q |
196 |
caccaacaacaagaggaaactctggaacagtctcagtcctatgaccacgagcaagaaccagtgaa |
260 |
Q |
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||||||||||||| |||| ||||||||| || || ||| ||||||||||| ||||| |||||| |
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| T |
28814528 |
caccaacaacaagtggaagctctggaaccgtttcgatccggtgaccacgagcgagaacaagtgaa |
28814592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 42533965 - 42533865
Alignment:
| Q |
147 |
ttcaaaaccttaatagcctccttagttttctctactccttcagcagcatcaccaacaacaagaggaaactctggaacagtctcagtcctatgaccacgag |
246 |
Q |
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||||||| ||| || || |||||||| ||||| || |||||||||| |||||||||||||||||||| ||| ||||| || || ||| |||||||||| |
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| T |
42533965 |
ttcaaaagcttgatcgcttccttagtcttctcaacaccttcagcagaatcaccaacaacaagaggaagctccggaaccgtttcgatccggtgaccacgag |
42533866 |
T |
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| Q |
247 |
c |
247 |
Q |
| |
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| |
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| T |
42533865 |
c |
42533865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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