View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12545_low_34 (Length: 263)
Name: NF12545_low_34
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 25 - 219
Target Start/End: Complemental strand, 16149879 - 16149685
Alignment:
| Q |
25 |
gttgataaagaaaaaagactagagaatatattttggtctccacctcattgctttgagttgtaccaagagtatggagatgttgttgcatttgataatacct |
124 |
Q |
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| T |
16149879 |
gttgataaagaaaaaagactagaaaatatattttggtctccacctcattgttttgaattgtaccaacagtatggagatgctgttgcatttgatactactt |
16149780 |
T |
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| Q |
125 |
acagggtgaatttttataatatgccttttggcatttttgttggaatcgacaatcacggaaggacaatattgtttggttgcgcgctcattcgaaat |
219 |
Q |
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| T |
16149779 |
acaaggtaaatacttataatatgccttttggcatttttgttggagtcgacaatcacggcagaacaatattgtttggttgtgcgctcattcgaaat |
16149685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 24 - 177
Target Start/End: Complemental strand, 4652480 - 4652322
Alignment:
| Q |
24 |
tgttgataaagaaaaaagactagagaatatattttggtctccacctcatt-----gctttgagttgtaccaagagtatggagatgttgttgcatttgata |
118 |
Q |
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| T |
4652480 |
tgttgataaagaaaaaagactagaaaatatattttggtctccacatcattatattgttttgaattgtaccaacgtaatggagatgatgttgcatttgaga |
4652381 |
T |
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| Q |
119 |
atacctacagggtgaatttttataatatgccttttggcatttttgttggaatcgacaat |
177 |
Q |
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| T |
4652380 |
ctatttacaaggtacatacttataatatgccttttggcatttttgttggaatcgacaat |
4652322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 23302268 - 23302374
Alignment:
| Q |
113 |
ttgataatacctacagggtgaatttttataatatgccttttggcatttttgttggaatcgacaatcacggaaggacaatattgtttggttgcgcgctcat |
212 |
Q |
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|||||| ||| |||| ||| ||| ||||||||||||||||||||| ||||||| ||||||||||||||| || ||||||||||||||||| |||||||| |
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| T |
23302268 |
ttgatactacttacaaggtaaatacttataatatgccttttggcatctttgttgtaatcgacaatcacggcagaacaatattgtttggttgtgcgctcat |
23302367 |
T |
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| Q |
213 |
tcgaaat |
219 |
Q |
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||||||| |
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| T |
23302368 |
tcgaaat |
23302374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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