View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12545_low_38 (Length: 251)
Name: NF12545_low_38
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 55870057 - 55869849
Alignment:
| Q |
1 |
atttgaacttctcccaccctctaatatctaaaaactttgatccaaatgaatgtgcttgggcttatggcatgaacattcttgaccttgaagcttggaggaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55870057 |
atttgaacttctcccaccctctaatatctaaaaactttgatccaaatgaatgtgcttgggcttatggcatgaacattcttgaccttgaagcttggaggaa |
55869958 |
T |
|
| Q |
101 |
gaccaatataagctatacataccattattgggttgagcaggtatatttattttttatcctgctataatattgtaatcagtatgaatcaaaatcagttcct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55869957 |
gaccaatataagctatacataccattattgggttgagcaggtatatttattttttatcctgctataatattgtaatcagtatgaatcaaaatcagttccc |
55869858 |
T |
|
| Q |
201 |
ggaatttac |
209 |
Q |
| |
|
||||||||| |
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|
| T |
55869857 |
ggaatttac |
55869849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 31536431 - 31536557
Alignment:
| Q |
1 |
atttgaacttctcccaccctctaatatctaaaaactttgatccaaatgaatgtgcttgggcttatggcatgaacattcttg-accttgaagcttggagga |
99 |
Q |
| |
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||||| |||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| || ||||||| || ||||||| |
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| T |
31536431 |
atttgtacttctcccaccctctaatatccaaaagttttgatccaaatgaatgtga-----------gcatgaacatttttttaccttgaggcatggagga |
31536519 |
T |
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| Q |
100 |
agaccaatataagctatacataccattattgggttgag |
137 |
Q |
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|||||||||||||| |||||||||||||| |||||||| |
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| T |
31536520 |
agaccaatataagccatacataccattatggggttgag |
31536557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 34674721 - 34674578
Alignment:
| Q |
1 |
atttgaacttctcccaccctctaatatctaaaaactttgatccaaatgaatgtgcttgggcttatggcatgaacattcttgaccttgaagcttggaggaa |
100 |
Q |
| |
|
|||||||||| || ||||||||||||||| |||| || |||| || |||||||||||||| ||||||||||||||| |||| | ||||||||||||| |
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| T |
34674721 |
atttgaacttttctcaccctctaatatctgaaaatttcaatcccaacgaatgtgcttgggcctatggcatgaacatttttgatttggaagcttggaggag |
34674622 |
T |
|
| Q |
101 |
gaccaatataagctatacataccattattgggttgagcaggtat |
144 |
Q |
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||||||||||||| ||| ||| ||| ||||||||| |||||||| |
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| T |
34674621 |
gaccaatataagcaataaatatcatcattgggttgcgcaggtat |
34674578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 12862763 - 12862807
Alignment:
| Q |
32 |
aaactttgatccaaatgaatgtgcttgggcttatggcatgaacat |
76 |
Q |
| |
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||||||||||||||||| |||| |||||| |||||||||||||| |
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| T |
12862763 |
aaactttgatccaaatgcttgtggttgggcatatggcatgaacat |
12862807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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