View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12545_low_4 (Length: 636)
Name: NF12545_low_4
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 38 - 628
Target Start/End: Original strand, 488556 - 489165
Alignment:
| Q |
38 |
aaccttaaccagtagtattacacgtgttctgttctttcgcattgttctgagagattctaattaagaaattcacttcacaatttgaaccaaatacattatt |
137 |
Q |
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| T |
488556 |
aaccttaactagtagtattacacgtgttctgttatttcgcattgttctgagagattctaattaagaaattcactttgcaatttgaaccaaatacattatt |
488655 |
T |
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| Q |
138 |
tgtgtaaatatttttatactgacaatcattcataatcatcaaatcattaaaaacatcttatttcaatcacaaatactttttgcacatatatatgaatga- |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
488656 |
tgtgtaaatatttttatactgacaatcattcataatcatccgatcattaaaaacatcttatttcaatcacaaatactttttgcacatatatatgaatgat |
488755 |
T |
|
| Q |
237 |
------------------aatatttgctagcaacatatgatataaaaataatttagttaattgaattttccttggattgaaaaacaggtgatgatttctg |
318 |
Q |
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| T |
488756 |
tgtgactaaactctttgaaatatttgctagcaacatatgatataaaaatgatttagttaattgaattttccttggattgaaaaacaggtgatgatttctg |
488855 |
T |
|
| Q |
319 |
gtgcactgacccatatggtgatccaaatggtacatattggctacaaggatgtcacatggtgcattgtgcatacaatagcttatggatgggaaatttcatc |
418 |
Q |
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| T |
488856 |
gtgcactgacccatatggtgatccaaatggtacatattggctacaaggatgtcacatggtgcattgtgcatacaatagcttatggatgggaaatttcatc |
488955 |
T |
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| Q |
419 |
caaccagattgggatatgtttcaatctacacacccttgtgctgcttttcatgcagcttctagagccatatctggtggtccaatttacataagtgacaccg |
518 |
Q |
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| T |
488956 |
caaccagattgggatatgtttcaatctacacacccttgtgctgcttttcatgcagcttctagagccatatctggtggtccaatttacataagtgacactg |
489055 |
T |
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| Q |
519 |
ttggaaatcacaattttgaccttctcaagaaactagctttgcctgatggtaccatccttagatgtgaaacctatgctctcccaactaaggactgtctctt |
618 |
Q |
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| T |
489056 |
ttggaaatcacaattttgaccttctcaagaaactagctttgcctgatggtaccatccttagatgtgaaacctatgctctcccaactaaggactgtctctt |
489155 |
T |
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| Q |
619 |
ctctgctcct |
628 |
Q |
| |
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|||| |||| |
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| T |
489156 |
ttctgatcct |
489165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 308 - 504
Target Start/End: Complemental strand, 34697235 - 34697039
Alignment:
| Q |
308 |
gatgatttctggtgcactgacccatatggtgatccaaatggtacatattggctacaaggatgtcacatggtgcattgtgcatacaatagcttatggatgg |
407 |
Q |
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| T |
34697235 |
gatgatttctggtgttctgatccatctggtgatccaaatggtacatattggctccaaggttgtcacatggtacattgtgcctataacagtttatggatgg |
34697136 |
T |
|
| Q |
408 |
gaaatttcatccaaccagattgggatatgtttcaatctacacacccttgtgctgcttttcatgcagcttctagagccatatctggtggtccaattta |
504 |
Q |
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| T |
34697135 |
gaaatttcattcacccagattgggacatgtttcaatccactcacccttgtgctgaatttcatgctgcctctagagctgtctctggtggaccaattta |
34697039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 6e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 303 - 531
Target Start/End: Complemental strand, 43637994 - 43637766
Alignment:
| Q |
303 |
caggtgatgatttctggtgcactgacccatatggtgatccaaatggtacatattggctacaaggatgtcacatggtgcattgtgcatacaatagcttatg |
402 |
Q |
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||||||||||||| |||||||| |||||| ||| ||||||||||||||||||||| | |||||||||||||||||||||||||| || || |||||||| |
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| T |
43637994 |
caggtgatgatttttggtgcacggacccagctggggatccaaatggtacatattggttgcaaggatgtcacatggtgcattgtgcctataacagcttatg |
43637895 |
T |
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| Q |
403 |
gatgggaaatttcatccaaccagattgggatatgtttcaatctacacacccttgtgctgcttttcatgcagcttctagagccatatctggtggtccaatt |
502 |
Q |
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| T |
43637894 |
gatgggaaattttatacaaccagattgggacatgttccaatctcatcatgcttgttctgaatttcatgctgcttctcgagcaatctctggcggaccaatt |
43637795 |
T |
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| Q |
503 |
tacataagtgacaccgttggaaatcacaa |
531 |
Q |
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| T |
43637794 |
tatgtaagcgactctgttggaaaccacaa |
43637766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 5076499 - 5076462
Alignment:
| Q |
160 |
caatcattcataatcatcaaatcattaaaaacatctta |
197 |
Q |
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| T |
5076499 |
caatcaatcataatcatcaaatcattaataacatctta |
5076462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 444
Target Start/End: Original strand, 43975962 - 43976035
Alignment:
| Q |
371 |
cacatggtgcattgtgcatacaatagcttatggatgggaaatttcatccaaccagattgggatatgtttcaatc |
444 |
Q |
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| T |
43975962 |
cacatgattcattgttcctacaatagcttatggatgggacaaatgattcaacctgattgggacatgtttcaatc |
43976035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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