View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12545_low_40 (Length: 246)
Name: NF12545_low_40
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 28392008 - 28391880
Alignment:
| Q |
1 |
cagaatcaaaaccaatccatccatgaactgtgttatctttgttctcacaagagtattgatatttatcatccacctgaaccagtcaaaatcatatcatatt |
100 |
Q |
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| T |
28392008 |
cagaatcaaaaccaatccatccatgaactgtgt-atctttgttctcacaagagtattgatatttatcatccacctgaaccagtcaaaatcatatcatatt |
28391910 |
T |
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| Q |
101 |
cattcacgtacgtgcatcgatcttttaacc |
130 |
Q |
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| T |
28391909 |
cattcacgtacgtgcatcgatcttttaacc |
28391880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 28391859 - 28391778
Alignment:
| Q |
155 |
gcaggtatctacctctcctctaaattgtgggttaattgggttggttaatagaactgcttcaggataagctagtacttgacct |
236 |
Q |
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| T |
28391859 |
gcaggtatctacctctcctctaaattgtgggttaattgggttggttaatagaactgcttcaggataagctagtacttgacct |
28391778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 28411020 - 28411126
Alignment:
| Q |
1 |
cagaatcaaaaccaatccatccatgaactgtgttatctttgttctcacaagagtattgatatttatcatccacctgaaccagtcaaaatcatatcatatt |
100 |
Q |
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| T |
28411020 |
cagaatcaagactaatccatccatgaactgtgttatttatgttctcacatgagtattgatatttatcatccacctgagtacgacaaaatcatttcatatt |
28411119 |
T |
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| Q |
101 |
cattcac |
107 |
Q |
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||||||| |
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| T |
28411120 |
cattcac |
28411126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 28384702 - 28384594
Alignment:
| Q |
1 |
cagaatcaaaaccaatccatccatgaactgtgttatctttgttctcacaagagtattgatatttatcatccacctgaaccagtcaaaatcatatcatatt |
100 |
Q |
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||||||||||| |||||| |||||||| ||||||||| |||||||||| ||||| |||||||||||||||||||||||| |||||| || |||| || |
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| T |
28384702 |
cagaatcaaaattaatccaaccatgaacagtgttatctgtgttctcacatgagtactgatatttatcatccacctgaacccaacaaaattatttcatttt |
28384603 |
T |
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| Q |
101 |
cattcacgt |
109 |
Q |
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||||||||| |
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| T |
28384602 |
cattcacgt |
28384594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 28411181 - 28411254
Alignment:
| Q |
163 |
ctacctctcctctaaattgtgggttaattgggttggttaatagaactgcttcaggataagctagtacttgacct |
236 |
Q |
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| T |
28411181 |
ctacctctcctgtaaattgtgggttatgtggtttggttaatagaactgcttcagggtaagctaaaacttgacct |
28411254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 28384513 - 28384440
Alignment:
| Q |
163 |
ctacctctcctctaaattgtgggttaattgggttggttaatagaactgcttcaggataagctagtacttgacct |
236 |
Q |
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|||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||| |||||||||||| |
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| T |
28384513 |
ctacctctcctctaaattgtggattaattggttttgttaatagaactgcttctttgtaagcaagtacttgacct |
28384440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 52064100 - 52064161
Alignment:
| Q |
14 |
aatccatccatgaactgtgttatctttgttctcacaagagtattgatatttatcatccacct |
75 |
Q |
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| T |
52064100 |
aatccatccatgaacttggctgtctttgttgtcacatgaatattgatacttatcatccacct |
52064161 |
T |
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