View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12545_low_42 (Length: 241)
Name: NF12545_low_42
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_low_42 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 94 - 210
Target Start/End: Original strand, 38015313 - 38015429
Alignment:
| Q |
94 |
tgacaaacagacagcaacatcaaataagaagtgtctttcataggacactttgcagaagaaataatgttccacgcttcgacccaatattaatgaagtgcaa |
193 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
38015313 |
tgacaaacagacagcaagatcaaacaagaagtgtctttcataggacactttgcagaagaactaatgtttcacacttcgacccaatattaatgaagtgcaa |
38015412 |
T |
|
| Q |
194 |
ttgtttcatgagcacaa |
210 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
38015413 |
ttctttcatgagcacaa |
38015429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 38015102 - 38015137
Alignment:
| Q |
13 |
atagagaggtgggggccaagggagtgatggtagtgt |
48 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38015102 |
atagaaaggtgggggccaagggagtgatggtagtgt |
38015137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University