View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12545_low_5 (Length: 632)
Name: NF12545_low_5
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 19 - 572
Target Start/End: Complemental strand, 43485824 - 43485269
Alignment:
| Q |
19 |
tctttatattccttcatcttacgaatccatcatttaaagcatcatgattcattaatcatgaataatataaatcatggcattgccttttgaatttgcatca |
118 |
Q |
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| T |
43485824 |
tctttatatttcttcatcttacgaatccatcatttaaagtatcatgattcatgaatcatgaataatataaatcatggcattgccttttgaatt-----ca |
43485730 |
T |
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| Q |
119 |
cttttattcacttcatgctatcgaggagaaaggaaggtttggatttttaaactttctttttaagttaaattggtacaacaagcaaaaacaaatctcttca |
218 |
Q |
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| T |
43485729 |
cttttattcacttcatgctatcgaggagaaaggaaggtttggatttttaaactttctttttaagttaaattggtacaacaagcaaaaacaaatctcttca |
43485630 |
T |
|
| Q |
219 |
tattttttagaagatcaaacatacaagttcttgtaattaagtttataacgtgtgaattcatttggtgtcgacgttcgactggggtttcatgtaatgtgtc |
318 |
Q |
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| T |
43485629 |
tattttttaaaagatcaaacatacaagttcttgtaattaagtttataatgtgtgaattcatttggtgtcgacgttcgactggggtttcatgtaatgtgtc |
43485530 |
T |
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| Q |
319 |
caataaattaggagcatcaattgaagattgagcatgccaaagtgttagtc-------tatcattatgattttaaccatgtcaagctttagaaacaaacca |
411 |
Q |
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| T |
43485529 |
caataaattaggagcatcaattgaagattgagcatgccaaagtgttagtctatgaagtatcattatgattttaaccatgtcaagctttagaaacaaacta |
43485430 |
T |
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| Q |
412 |
aatttattgctacaatagtgatactcagaggatgttgtatgcatgaaatagctcacttaacgacattcctttgtctcttctcaaatactcgttatcatga |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43485429 |
aatttattgctacaatagtgatactcagaggatgttgtatgcatgaaatagctcacttaacgacattcctttgtctcttctcaaatactcggtatcatga |
43485330 |
T |
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| Q |
512 |
aaattagactaaaaaatagttgtgcttaaatctttaaataatagcttcgacaattacatat |
572 |
Q |
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| T |
43485329 |
aaattagactaaaaaatagttgtgcttaaatctttaaataatagcttcgacgattacatat |
43485269 |
T |
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