View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12545_low_53 (Length: 228)

Name: NF12545_low_53
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12545_low_53
NF12545_low_53
[»] chr2 (1 HSPs)
chr2 (1-222)||(45366661-45366882)
[»] chr7 (3 HSPs)
chr7 (31-138)||(23422575-23422685)
chr7 (78-125)||(619605-619652)
chr7 (106-134)||(26881707-26881735)
[»] chr6 (1 HSPs)
chr6 (78-135)||(9685130-9685187)
[»] scaffold0229 (1 HSPs)
scaffold0229 (78-138)||(7473-7533)
[»] chr1 (1 HSPs)
chr1 (78-138)||(1281465-1281525)
[»] chr5 (3 HSPs)
chr5 (78-133)||(19726768-19726823)
chr5 (33-134)||(26387936-26388037)
chr5 (81-133)||(15596367-15596419)
[»] chr3 (2 HSPs)
chr3 (8-111)||(26023606-26023712)
chr3 (78-132)||(26023705-26023760)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 45366882 - 45366661
Alignment:
Q  1 tgtgtcaaatcaaattacaccgtagtgccgcttttataggttagttcataaaatatctccacaaatttacatgactcatttgattggatgcatgtttgaa 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45366882 tgtgtcaaatcaaattacaccatagtgccgcttttataggttagttcataaaatatctccacaaatttacatgactcatttgattggatgcatgtttgaa 45366783  T
Q  101 aaagttttacatcgtcagtgtatacaaattaaatccttgtgataaattttatttcgtataccgattccttctaatcatgatggtggttggaaataaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45366782 aaagttttacatcgtcagtgtatacaaattaaatccttgtgataaattttatttcgtataccgattccttctaatcatgatggtggttggaaataaaatt 45366683  T
Q  201 ctatttatggtcatatacgctg 222  Q
    ||||||||||||||||||||||    
T  45366682 ctatttatggtcatatacgctg 45366661  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 23422685 - 23422575
Alignment:
Q  31 cttttataggttagttcataaaatatctccacaaatt--tacatgac-tcatttgattggatgcatgtttgaaaaagttttacatcgtcagtgtatacaa 127  Q
    |||||||| ||||| || ||||||||| ||||||||   |||||||| | |||||| ||| ||||||| |||||||||||||||  ||| | ||||||||    
T  23422685 cttttatatgttagctcctaaaatatccccacaaatacctacatgacatgatttgaatggctgcatgtgtgaaaaagttttacactgtcggcgtatacaa 23422586  T
Q  128 attaaatcctt 138  Q
    |||||||||||    
T  23422585 attaaatcctt 23422575  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 619605 - 619652
Alignment:
Q  78 atttgattggatgcatgtttgaaaaagttttacatcgtcagtgtatac 125  Q
    ||||||||| |||||||| |||||||||||||||  ||||||||||||    
T  619605 atttgattgaatgcatgtgtgaaaaagttttacagtgtcagtgtatac 619652  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 26881707 - 26881735
Alignment:
Q  106 tttacatcgtcagtgtatacaaattaaat 134  Q
    |||||||||||||||||||||||||||||    
T  26881707 tttacatcgtcagtgtatacaaattaaat 26881735  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 9685130 - 9685187
Alignment:
Q  78 atttgattggatgcatgtttgaaaaagttttacatcgtcagtgtatacaaattaaatc 135  Q
    ||||||||| |||||||| |  ||||||||||||||||||||||| ||||||||||||    
T  9685130 atttgattgaatgcatgtgtagaaaagttttacatcgtcagtgtagacaaattaaatc 9685187  T

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Target: scaffold0229 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 7473 - 7533
Alignment:
Q  78 atttgattggatgcatgtttgaaaaagttttacatcgtcagtgtatacaaattaaatcctt 138  Q
    |||||||||||||||||| | |||||  ||||||  || ||||||||||||||||||||||    
T  7473 atttgattggatgcatgtgtaaaaaaagtttacactgtaagtgtatacaaattaaatcctt 7533  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 1281465 - 1281525
Alignment:
Q  78 atttgattggatgcatgtttgaaaaagttttacatcgtcagtgtatacaaattaaatcctt 138  Q
    |||||||||||||||||| | |||||  ||||||  || ||||||||||||||||||||||    
T  1281465 atttgattggatgcatgtgtaaaaaaagtttacactgtaagtgtatacaaattaaatcctt 1281525  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 19726823 - 19726768
Alignment:
Q  78 atttgattggatgcatgtttgaaaaagttttacatcgtcagtgtatacaaattaaa 133  Q
    |||||||||||||||||| | ||||||||||| | ||||  |||||||||||||||    
T  19726823 atttgattggatgcatgtgtaaaaaagttttagaccgtcgatgtatacaaattaaa 19726768  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 134
Target Start/End: Complemental strand, 26388037 - 26387936
Alignment:
Q  33 tttataggttagttcataaaatatctccacaaatttacatgac-tcatttgattggatgcatgtttgaaaaagttttacatcgtcagtgtatacaaatta 131  Q
    ||||||||||||||  ||||| |||||||||||| |||||| | | |||| ||||||||||||| | |||||   |||||| ||| ||||||| ||||||    
T  26388037 tttataggttagtttctaaaaaatctccacaaatatacatggcgtgatttaattggatgcatgtct-aaaaaaaattacattgtcggtgtatataaatta 26387939  T
Q  132 aat 134  Q
    |||    
T  26387938 aat 26387936  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 15596419 - 15596367
Alignment:
Q  81 tgattggatgcatgtttgaaaaagttttacatcgtcagtgtatacaaattaaa 133  Q
    ||||||||||||||| | ||| |||||||||| |||| ||||||| |||||||    
T  15596419 tgattggatgcatgtgtaaaagagttttacattgtcaatgtatacgaattaaa 15596367  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 26023712 - 26023606
Alignment:
Q  8 aatcaaattacaccgtagtgccgcttttataggttagttcataaaatatctccacaaattt--acatgac-tcatttgattggatgcatgtttgaaaaag 104  Q
    |||||||| | ||| ||||||| ||||||||||||||||| |||||||| || |||||| |  || |||| | ||||||||||||||| || | |||| |    
T  26023712 aatcaaatcataccatagtgccacttttataggttagttcctaaaatatgtctacaaatatccacgtgacatgatttgattggatgcacgtgtaaaaagg 26023613  T
Q  105 ttttaca 111  Q
    |||||||    
T  26023612 ttttaca 26023606  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 26023705 - 26023760
Alignment:
Q  78 atttgattggatgcatgt-ttgaaaaagttttacatcgtcagtgtatacaaattaa 132  Q
    |||||||||||||||||| || ||||||||||||  ||||| ||||||||||||||    
T  26023705 atttgattggatgcatgtgttaaaaaagttttacgccgtcaatgtatacaaattaa 26023760  T

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