View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12545_low_8 (Length: 461)
Name: NF12545_low_8
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_low_8 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr8 (8 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
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| [»] chr4 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0070 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 51 - 461
Target Start/End: Complemental strand, 1608960 - 1608551
Alignment:
| Q |
51 |
caagtgta-attcagtggagcaaagaccacgagtagatatcttaatagctgctatattgctaaggtaagggaaagggcgctccatttcttattttatata |
149 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
1608960 |
caagtgtagattcagtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaaggaaaagggcgctccattttttattttatata |
1608861 |
T |
|
| Q |
150 |
tgtatttactggttgattaaatgatgatgtttttaacatgtttatgtgttgtgccatgcttatatactatgtgaacttgatcttgtactgcttggttgtg |
249 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||| |||| |||||||| |||||||||||| ||||| ||||| |||||||||||| |
|
|
| T |
1608860 |
tgtatttactggttgtttaaaggatgatgtttttaacatgtttatgtattgtatcatgcttacatactatgtgaatttgattttgtattgcttggttgtg |
1608761 |
T |
|
| Q |
250 |
agtataacttgttgttttcatgcctgaattgtggtcttgcatattttcttagttggagttgttgtcggtgtaatcagtgtctctagcaggtggttaagac |
349 |
Q |
| |
|
||||||||||| | || | |||||| ||||||||||||||||||| ||||| |||||| |||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
1608760 |
agtataacttgccg-ttccttgcctggtttgtggtcttgcatattttgttagtcggagttactgtc-gtgtaatcaatgtctctagcaggtggttaagac |
1608663 |
T |
|
| Q |
350 |
aatgattgatttagtcggatactcattttgggtgatctattttgtggagttaataaccagatgtcgcatgcatacattcattgtcgcgtggtgcccataa |
449 |
Q |
| |
|
||||||| ||||||||||||||||||| || ||| ||||| ||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1608662 |
aatgattaatttagtcggatactcattgtgagtggtctatcttgtggagttaataagcaggtgtcgcatgcatacattcatggtcgcgtggtgcccataa |
1608563 |
T |
|
| Q |
450 |
ttggttgggacc |
461 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1608562 |
ttggttgggacc |
1608551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 59 - 461
Target Start/End: Original strand, 2187860 - 2188263
Alignment:
| Q |
59 |
attcagtggagcaaagaccacgagtagatatcttaatagctgctatattgctaaggtaagggaaagggcgctccatttcttattttatatatgtatttac |
158 |
Q |
| |
|
|||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2187860 |
attcagtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaagggaaagggcgctccattttttattttatatatgtatttac |
2187959 |
T |
|
| Q |
159 |
tggttgatt--aaatgatgatgtttttaacatgtttatgtgttgtgccatgcttatatactatgtgaacttgatcttgtactgcttggttgtgagtataa |
256 |
Q |
| |
|
| ||| || ||| | ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
2187960 |
ttgtttttttaaaagggtgatgtttttaacatgtttatgtattgtatcatgcttacatactatgtgaacttgattttgtattgattggttgtgagtataa |
2188059 |
T |
|
| Q |
257 |
cttgttgttttcatgcctgaattgtggtcttgcatattttcttagttggagttgttgtcggtgtaatcagtgtctctagcaggtggttaagacaatgatt |
356 |
Q |
| |
|
|||||||||| ||||| || |||| ||||||||||||||| ||||| | ||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2188060 |
cttgttgttt-catgcttggattgaggtcttgcatattttgttagtcagcgttactgtcggtgtaatcaatgtctctagcaggtggttaagacaatgatt |
2188158 |
T |
|
| Q |
357 |
gatttagtcggatactcattttgggtgatctattttgtggagttaataaccagatgtcgcatgcatacattcattgtcgcgtggtgcccataattggttg |
456 |
Q |
| |
|
||| ||||||||||||||| || ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2188159 |
aattaagtcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcattgtcgcgtggtgctcataattggttg |
2188258 |
T |
|
| Q |
457 |
ggacc |
461 |
Q |
| |
|
||||| |
|
|
| T |
2188259 |
ggacc |
2188263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 51 - 461
Target Start/End: Complemental strand, 19633053 - 19632641
Alignment:
| Q |
51 |
caagtgta-attcagtggagcaaagaccacgagtagatatcttaatagctgctatattgctaaggtaagggaaagggcgctccatttcttattttatata |
149 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| | || |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19633053 |
caagtgtagattcagtggagcaaagaccatgagtataaatattaatagctgctatattgttaaggtaagggaaagggcgctccattttttattttatata |
19632954 |
T |
|
| Q |
150 |
tgtatttactggttgatt--aaatgatgatgtttttaacatgtttatgtgttgtgccatgcttatatactatgtgaacttgatcttgtactgcttggttg |
247 |
Q |
| |
|
|||||||||| ||| || ||| ||||||||||||||||||||||| | |||| |||||||| |||||||||||||||||| ||||| ||||| |||| |
|
|
| T |
19632953 |
tgtatttacttgttttttttaaaggatgatgtttttaacatgtttatatattgtatcatgcttacatactatgtgaacttgattttgtattgcttcgttg |
19632854 |
T |
|
| Q |
248 |
tgagtataacttgttgttttcatgcctgaattgtggtcttgcatattttcttagttggagttgttgtcggtgtaatcagtgtctctagcaggtggttaag |
347 |
Q |
| |
|
||||||||||||||||||| ||||| || |||| ||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19632853 |
tgagtataacttgttgttt-catgcttggattgaggtcttgcatattttgttagtcaacgttactgtcggtgtaatcaatgtctctagcaggtggttaag |
19632755 |
T |
|
| Q |
348 |
acaatgattgatttagtcggatactcattttgggtgatctattttgtggagttaataaccagatgtcgcatgcatacattcattgtcgcgtggtgcccat |
447 |
Q |
| |
|
||||||||| ||||||||||||||||||| || ||| ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
19632754 |
acaatgattaatttagtcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcagtgtcgcgtggtgctcat |
19632655 |
T |
|
| Q |
448 |
aattggttgggacc |
461 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
19632654 |
aattggttgggacc |
19632641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 59 - 461
Target Start/End: Complemental strand, 41314075 - 41313672
Alignment:
| Q |
59 |
attcagtggagcaaagaccacgagtagatatcttaatagctgctatattgctaaggtaagggaaagggcgctccatttctt--attttatatatgtattt |
156 |
Q |
| |
|
|||| ||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||| || |
|
|
| T |
41314075 |
attccgtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaagggaaatggcgctccattttttctattttatatatgtagtt |
41313976 |
T |
|
| Q |
157 |
actggttgattaaatgatgatgtttttaacatgtttatgtgttgtgccatgcttatatactatgtgaacttgatcttgtactgcttggttgtgagtataa |
256 |
Q |
| |
|
||| |||| | |||||||||||||||||||||||||| || || | ||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
41313975 |
acttgttgttaaaatgatgatgtttttaacatgtttaagtattttaccatgcttacatactatgtgaacttgattttgtattgcttggttgtgagtataa |
41313876 |
T |
|
| Q |
257 |
cttgttgttttcatgcctgaattgtggtcttgcatattttcttagttggagttgttgtcggtgtaatcagtgtctctagcaggtggttaagacaatgatt |
356 |
Q |
| |
|
|||||||||| |||||||| |||| ||||||||||||||| |||||| | ||| ||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41313875 |
cttgttgttt-catgcctggattgaggtcttgcatattttgttagttagcgttactgttggtgtaatcaatgtctctagcaggtggttaagacaatgatt |
41313777 |
T |
|
| Q |
357 |
gatttagtcggatactcattttgggtgatctattttgtggagttaataaccagatgtcgcatgcatacattcattgtcgcgtggtgcccataattggttg |
456 |
Q |
| |
|
||||||||||||||||||| || ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41313776 |
aatttagtcggatactcattgtgagtggtctattttgtggagttaataagcaggtgtcgcatgcatacattcattgtcgcgtggtgctcataattggttg |
41313677 |
T |
|
| Q |
457 |
ggacc |
461 |
Q |
| |
|
||||| |
|
|
| T |
41313676 |
ggacc |
41313672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 59 - 461
Target Start/End: Original strand, 29822632 - 29823035
Alignment:
| Q |
59 |
attcagtggagcaaagaccacgagtagatatcttaatagctgctatattgctaaggtaagggaaagggcgctccatttctt-attttatatatgtattta |
157 |
Q |
| |
|
||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
29822632 |
attcagtggagcaaataccacgagttgaaatcttaatagctgctatattgctaaggtaagggaaagggcgctccatttttttattttatatatgtattta |
29822731 |
T |
|
| Q |
158 |
ctggttgatt--aaatgatgatgtttttaacatgtttatgtgttgtgccatgcttatatactatgtgaacttgatcttgtactgcttggttgtgagtata |
255 |
Q |
| |
|
|| ||| || ||| |||| |||||||||||||||||||| |||| |||||||| |||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
29822732 |
cttgtttttttaaaaggatggtgtttttaacatgtttatgtattgtatcatgcttacatactatgtgaacttgattttgtattgcttggttgtgagtatg |
29822831 |
T |
|
| Q |
256 |
acttgttgttttcatgcctgaattgtggtcttgcatattttcttagttggagttgttgtcggtgtaatcagtgtctctagcaggtggttaagacaatgat |
355 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||||||| ||||| |||||| |||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
29822832 |
acttgttgttt-catgcttggattgtggtcttgcatattttgttagtcggagttactgtcggtgtaatcaatgtctctagcaggtggttaagaccatgat |
29822930 |
T |
|
| Q |
356 |
tgatttagtcggatactcattttgggtgatctattttgtggagttaataaccagatgtcgcatgcatacattcattgtcgcgtggtgcccataattggtt |
455 |
Q |
| |
|
| |||||||| |||||||||| || ||| |||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29822931 |
taatttagtcagatactcattgtgagtggtctattttgtggag-taataagcaggtgtcgcatgcatacattcattgtcgcgtggtgcccataattggtt |
29823029 |
T |
|
| Q |
456 |
gggacc |
461 |
Q |
| |
|
|||||| |
|
|
| T |
29823030 |
gggacc |
29823035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 88 - 340
Target Start/End: Complemental strand, 7094230 - 7093977
Alignment:
| Q |
88 |
atcttaatagctgctatattgctaaggtaagggaaagggcgctccatttctt-attttatatatgtatttactggttgatt---aaatgatgatgttttt |
183 |
Q |
| |
|
||||||| ||||||||| || ||||||||||||||||||||||||||| || |||||||||||||||||||| ||| || ||| |||||||||||| |
|
|
| T |
7094230 |
atcttaagagctgctat--tgttaaggtaagggaaagggcgctccatttttttattttatatatgtatttacttgttttttttaaaaggatgatgttttt |
7094133 |
T |
|
| Q |
184 |
aacatgtttatgtgttgtgccatgcttatatactatgtgaacttgatcttgtactgcttggttgtgagtataacttgttgttttcatgcctgaattgtgg |
283 |
Q |
| |
|
||||||||||||| |||| |||||||| |||||| ||||||||||| ||||| ||||||||||||||||||| |||||| ||||||||||| |||| || |
|
|
| T |
7094132 |
aacatgtttatgtattgtatcatgcttacatactaggtgaacttgattttgtattgcttggttgtgagtataaattgttg-tttcatgcctggattgagg |
7094034 |
T |
|
| Q |
284 |
tcttgcatattttcttagttggagttgttgtcggtgtaatcagtgtctctagcaggt |
340 |
Q |
| |
|
||||||||||||| ||||| | ||| |||||||||||||| |||||||||||||| |
|
|
| T |
7094033 |
tcttgcatattttgttagtcagcgttactgtcggtgtaatcaatgtctctagcaggt |
7093977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 88 - 340
Target Start/End: Complemental strand, 7097963 - 7097710
Alignment:
| Q |
88 |
atcttaatagctgctatattgctaaggtaagggaaagggcgctccatttctt-attttatatatgtatttactggttgatt---aaatgatgatgttttt |
183 |
Q |
| |
|
||||||| ||||||||| || ||||||||||||||||||||||||||| || |||||||||||||||||||| ||| || ||| |||||||||||| |
|
|
| T |
7097963 |
atcttaagagctgctat--tgttaaggtaagggaaagggcgctccatttttttattttatatatgtatttacttgttttttttaaaaggatgatgttttt |
7097866 |
T |
|
| Q |
184 |
aacatgtttatgtgttgtgccatgcttatatactatgtgaacttgatcttgtactgcttggttgtgagtataacttgttgttttcatgcctgaattgtgg |
283 |
Q |
| |
|
||||||||||||| |||| |||||||| |||||| ||||||||||| ||||| ||||||||||||||||||| |||||| ||||||||||| |||| || |
|
|
| T |
7097865 |
aacatgtttatgtattgtatcatgcttacatactaggtgaacttgattttgtattgcttggttgtgagtataaattgttg-tttcatgcctggattgagg |
7097767 |
T |
|
| Q |
284 |
tcttgcatattttcttagttggagttgttgtcggtgtaatcagtgtctctagcaggt |
340 |
Q |
| |
|
||||||||||||| ||||| | ||| |||||||||||||| |||||||||||||| |
|
|
| T |
7097766 |
tcttgcatattttgttagtcagcgttactgtcggtgtaatcaatgtctctagcaggt |
7097710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 110 - 324
Target Start/End: Complemental strand, 454166 - 453952
Alignment:
| Q |
110 |
taaggtaagggaaagggcgctccatttctt-attttatatatgtatttactggttgattaaatgatgatgtttttaacatgtttatgtgttgtgccatgc |
208 |
Q |
| |
|
||||||| ||||||||||||||||||| || |||||||||||||| ||||| |||| | ||||||||||||||| ||||||||||| | ||| || ||| |
|
|
| T |
454166 |
taaggtacgggaaagggcgctccatttttttattttatatatgtagttacttgttgttaaaatgatgatgtttt-aacatgtttatatagtgtaccctgc |
454068 |
T |
|
| Q |
209 |
ttatatactatgtgaacttgatcttgtactgcttggttgtgagtataacttgttgttttcatgcctgaattgtggtcttgcatattttcttagttggagt |
308 |
Q |
| |
|
|| |||||||||||||||| | ||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| | ||| |||| |
|
|
| T |
454067 |
tttcatactatgtgaacttgcttttgtattgcttggttgtgaatataacttgttgttttcatgtatgaattgtggtcttgcatattttgtaagtcggagc |
453968 |
T |
|
| Q |
309 |
tgttgtcggtgtaatc |
324 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
453967 |
tattgtcggtgtaatc |
453952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 332 - 461
Target Start/End: Complemental strand, 452171 - 452044
Alignment:
| Q |
332 |
ctagcaggtggttaagacaatgattgatttagtcggatactcattttgggtgatctattttgtggagttaataaccagatgtcgcatgcatacattcatt |
431 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||| |||||||| | | | | | ||||||||||||||||| ||| |||| |||||||||||||||| |
|
|
| T |
452171 |
ctagcaggtggttaaga--atgattaatttagtcggttactcattaagagcggtgttttttgtggagttaataatcaggtgtcacatgcatacattcatt |
452074 |
T |
|
| Q |
432 |
gtcgcgtggtgcccataattggttgggacc |
461 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
|
|
| T |
452073 |
gtcgtgtggtgcccataattggttgggacc |
452044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 364 - 461
Target Start/End: Complemental strand, 7093976 - 7093879
Alignment:
| Q |
364 |
tcggatactcattttgggtgatctattttgtggagttaataaccagatgtcgcatgcatacattcattgtcgcgtggtgcccataattggttgggacc |
461 |
Q |
| |
|
||||||| ||||| || || ||||||| |||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
7093976 |
tcggatattcattgtgagttgtctatttggtggagttaatatgcaggtgtcgcatgcatacattcattgttgcgtggtgcccataattggttaggacc |
7093879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 364 - 461
Target Start/End: Complemental strand, 7097709 - 7097612
Alignment:
| Q |
364 |
tcggatactcattttgggtgatctattttgtggagttaataaccagatgtcgcatgcatacattcattgtcgcgtggtgcccataattggttgggacc |
461 |
Q |
| |
|
||||||| ||||| || || ||||||| |||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
7097709 |
tcggatattcattgtgagttgtctatttggtggagttaatatgcaggtgtcgcatgcatacattcattgttgcgtggtgcccataattggttaggacc |
7097612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 45463097 - 45463000
Alignment:
| Q |
104 |
tattgctaaggtaagggaaagggcgctccatttcttattttatatatgtatttactggttgattaaatgatgatgtttttaacatgtttatgtgttgt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||| || | ||| | | ||||| ||| ||| ||||||||||| |||||| |
|
|
| T |
45463097 |
tattgctaaggtaagggaaagggcgctccattatttattttatatatatatctatttattgttaacatgataatgctttgaacatgtttatttgttgt |
45463000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 104 - 461
Target Start/End: Original strand, 19215544 - 19215909
Alignment:
| Q |
104 |
tattgctaaggtaagggaaagggcgctccatttct-tattttatatatgtatttactggttgattaaatgatgatgtttttaacatgtttatgtgttgtg |
202 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| |||| | |||||||||||||||||||||||||| || |||| |
|
|
| T |
19215544 |
tattgttaaggtaagggaaagggcgctccatttttctattttatatatgtatttacttgttgttaaaatgatgatgtttttaacatgtttaagtattgta |
19215643 |
T |
|
| Q |
203 |
ccatgcttatatactatgtg-------aacttgatcttgtactgcttggttgtgagtataacttgttgttttcatgcctgaattgtggtcttgcatattt |
295 |
Q |
| |
|
||||||||| |||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19215644 |
ccatgcttacatactatgtgctatgtgaacttgattttgtattgcttggttgtgagtataacttgttgttttcatgtctgaattgtggtcttgcatattt |
19215743 |
T |
|
| Q |
296 |
tcttagttggagttgttgtcggtgtaatcagtgtctctagcaggtggttaagacaatgattgatttagtcggatactcattttgggtgatctattttgtg |
395 |
Q |
| |
|
| | ||| || || | ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || ||| |||||||||| |
|
|
| T |
19215744 |
tgtaagtcggtattactatcggtgtaatcagtgtctctagcaggtggttaagataatgattaatttagtcggatactcattgtgagtggcctattttgtg |
19215843 |
T |
|
| Q |
396 |
gagttaataaccagatgtcgcatgcatacattcattgtcgcgtggtgcccataattggttgggacc |
461 |
Q |
| |
|
|||||||||| ||| ||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19215844 |
gagttaataagcaggtgttgcatgcatacattcattgtcgcatggtgcccataattggttgggacc |
19215909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 457
Target Start/End: Original strand, 19589454 - 19589649
Alignment:
| Q |
264 |
ttttcatgcctgaattgtggtcttgcatattttcttagttggagttgttgtcggtgtaatcagtgtctctagcaggtggttaagacaatgattgatttag |
363 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| | || | | || |||| | ||||||| |||||||||| |||||||| |||| ||| |||||| |
|
|
| T |
19589454 |
ttttcatgcttcaattgtggtcttgcatattttgtatgtcgaaattattgttgatgtaatctgtgtctctagatggtggttagaacaaccattaatttag |
19589553 |
T |
|
| Q |
364 |
tcggatactcattttgggtgatcta-ttttgtggagttaa-taaccagatgtcgcatgcatacattcattgtcgcgtggtgcccataattggttgg |
457 |
Q |
| |
|
| ||||||||| | | ||||||| |||| ||||||||| |||||| | | |||||||| |||||| |||| ||| ||||||||||||||||| |
|
|
| T |
19589554 |
ttggatactcagtgtaattgatctatttttatggagttaattaaccatgtattacatgcatatattcatcgtcgtgtgctgcccataattggttgg |
19589649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 19589281 - 19589337
Alignment:
| Q |
110 |
taaggtaagggaaagggcgctccatttcttattttatatatgtatttactggttgat |
166 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||||||| ||||||||| |||| |||||| |
|
|
| T |
19589281 |
taaggtaaggaaaatggcgctccattatttattttttatatgtatctacttgttgat |
19589337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 208; Significance: 1e-113; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 91 - 459
Target Start/End: Complemental strand, 37627499 - 37627131
Alignment:
| Q |
91 |
ttaatagctgctatattgctaaggtaagggaaagggcgctccatttcttattttatatatgtatttactggttgatt--aaatgatgatgtttttaacat |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| || ||| ||||||||||||||||| |
|
|
| T |
37627499 |
ttaatagctgctatattgctaaggtaagggaaagggcgctccattttttattttatatatgtatttacttgtttttttaaaaggatgatgtttttaacat |
37627400 |
T |
|
| Q |
189 |
gtttatgtgttgtgccatgcttatatactatgtgaacttgatcttgtactgcttggttgtgagtataacttgttgttttcatgcctgaattgtggtcttg |
288 |
Q |
| |
|
|||||||| |||| |||||||| |||||||||||||||||| || || ||||||||||||||||||| |||||| |||||||||| |||| ||||| | |
|
|
| T |
37627399 |
gtttatgtattgtatcatgcttacatactatgtgaacttgattttatattgcttggttgtgagtataaattgttg-tttcatgccttgattgaggtctag |
37627301 |
T |
|
| Q |
289 |
catattttcttagttggagttgttgtcggtgtaatcagtgtctctagcaggtggttaagacaatgattgatttagtcggatactcattttgggtgatcta |
388 |
Q |
| |
|
|||||||| ||||| | || |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||| || ||| |||| |
|
|
| T |
37627300 |
catattttgttagtcagcattcctgtcggtgtaatcaatgtctctagcaggtggttaagacaatgattaatttagtcgcatactcattgtgagtggtcta |
37627201 |
T |
|
| Q |
389 |
ttttgtggagttaataaccagatgtcgcatgcatacattcattgtcgcgtggtgcccataattggttggga |
459 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37627200 |
-tttgtggagttaatatgcaggtgtcgcatgcatacattcattgtcgcttggtgcccataattggttggga |
37627131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 51 - 400
Target Start/End: Complemental strand, 37806650 - 37806299
Alignment:
| Q |
51 |
caagtgta-attcagtggagcaaagaccacgagtagatatcttaatagctgctatattgctaaggtaagggaaagggcgctcca-tttcttattttatat |
148 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
37806650 |
caagtgtagattcagtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaagggaaagggcgctccatttttttattttatat |
37806551 |
T |
|
| Q |
149 |
atgtatttactggttgatt----aaatgatgatgtttttaacatgtttatgtgttgtgccatgcttatatactatgtgaacttgatcttgtactgcttgg |
244 |
Q |
| |
|
||||||||||| ||| || ||| |||||||||||| |||||||||||| |||| |||||||| |||||||||||||||||| ||||| ||||| | |
|
|
| T |
37806550 |
atgtatttacttgtttttttttaaaaggatgatgtttttgacatgtttatgtattgtatcatgcttacatactatgtgaacttgattttgtattgctttg |
37806451 |
T |
|
| Q |
245 |
ttgtgagtataacttgttgttttcatgcctgaattgtggtcttgcatattttcttagttggagttgttgtcggtgtaatcagtgtctctagcaggtggtt |
344 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| ||||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
37806450 |
ttgtgagtataacttgtt-atttcatgcctggattgaggtcttgcatattttgttagt---cgttactgtcggtgtaatcaatgtctctagcaggtggtt |
37806355 |
T |
|
| Q |
345 |
aagacaatgattgatttagtcggatactcattttgggtgatctattttgtggagtt |
400 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| || ||| |||||||||||||||| |
|
|
| T |
37806354 |
aagacaatgattaatttagtcggatactcattgtgagtggtctattttgtggagtt |
37806299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 148 - 461
Target Start/End: Complemental strand, 14276344 - 14276032
Alignment:
| Q |
148 |
tatgtatttactggttgattaaatgatgatgtttttaacatgtttatgtgttgtgccatgcttatatactatgtgaacttgatcttgtactgcttggttg |
247 |
Q |
| |
|
|||||||||||| |||| | ||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| | ||||| |||| || |
|
|
| T |
14276344 |
tatgtatttacttgttgttaaaatgatgatgtttttaacatgtttatgtattgtaccatgcttacatactatgtgaacttgcttttgta----ttggctg |
14276249 |
T |
|
| Q |
248 |
tgagtataacttgttgttttcatgcctgaattgtggtcttgcatattttcttagttggagttgttgtcggtgtaatcagtgtctctagcaggtggttaag |
347 |
Q |
| |
|
|||| |||| ||||||||||||| |||||||| || ||||||||||| | ||| ||||| |||||| ||||||| |||||||| ||||||||||||| |
|
|
| T |
14276248 |
tgagcataatttgttgttttcatatctgaattgcggacttgcatatttg-taagtcagagttattgtcgatgtaatctgtgtctctggcaggtggttaag |
14276150 |
T |
|
| Q |
348 |
acaatgattgatttagt----cggatactcattttgggtgatctattttgtggagttaataaccagatgtcgcatgcatacattcattgtcgcgtggtgc |
443 |
Q |
| |
|
||||||||| |||| || |||||||||||| || |||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
14276149 |
acaatgattaatttggttggtcggatactcattgtgtgtgatctattttttggagttaataatcatgtgtcgcatgcatacattcattgtcgcgtggtgc |
14276050 |
T |
|
| Q |
444 |
ccataattggttgggacc |
461 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
14276049 |
ctataattggttgggacc |
14276032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 64 - 356
Target Start/End: Complemental strand, 33614785 - 33614493
Alignment:
| Q |
64 |
gtggagcaaagaccacgagtagatatcttaatagctgctatattgctaaggtaagggaaagggcgctccatttcttattttatatatgtatttactggtt |
163 |
Q |
| |
|
||||||||||||||| | || || ||||||||||| |||| | |||||||||||| ||||||| ||||||| ||||||| ||||| ||| |||| ||| |
|
|
| T |
33614785 |
gtggagcaaagaccatgggttgaaatcttaatagcgactatct-gctaaggtaaggaaaagggcactccattatttattttttatatatatctacttgtt |
33614687 |
T |
|
| Q |
164 |
gattaaatgatgatgtttttaacatgtttatgtgttgtgccatgctt-atatactatgtgaacttgatcttgtactgcttggttgtgagtataacttgtt |
262 |
Q |
| |
|
||| | ||||| ||||||| | | ||||||||| ||| || | | |||||| |||||||||| ||||| || |||||||||||||||| ||||| |
|
|
| T |
33614686 |
gataacatgattatgttttgagcttgtttatgtaatgtattatagtgcacgtactatatgaacttgattttgtattgtttggttgtgagtataatttgtt |
33614587 |
T |
|
| Q |
263 |
gttttcatgcctgaattgtggtcttgcatattttcttagttggagttgttgtcggtgtaatcagtgtctctagcaggtggttaagacaatgatt |
356 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||| | ||| | | || |||| |||||||| |||||||| | | |||||||||||||||||| |
|
|
| T |
33614586 |
gtttttatgcgtgaattgtggtcttgcatattttgtaagtcgaaattattgttggtgtaatttgtgtctctcgtatgtggttaagacaatgatt |
33614493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 396 - 461
Target Start/End: Complemental strand, 37803698 - 37803633
Alignment:
| Q |
396 |
gagttaataaccagatgtcgcatgcatacattcattgtcgcgtggtgcccataattggttgggacc |
461 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37803698 |
gagttaatatgcaggtgtcgcatgcatacattcattgtcgtgtggtgcccataattggttgggacc |
37803633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 119 - 461
Target Start/End: Complemental strand, 11992192 - 11991851
Alignment:
| Q |
119 |
ggaaagggcgctccatttcttattttatatatgtatttactggttgattaaatgatgatgtttttaacatgtttatgtgttgtgccatgcttatatacta |
218 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||| ||||| ||| ||||||||||||| ||||||| |||| |||||| || |||||| |
|
|
| T |
11992192 |
ggaaagggcgctccattttttattttatatatgtatttacttgttg-ttaaaagataatgtttttaacatatttatgtattgtaccatgcatacatacta |
11992094 |
T |
|
| Q |
219 |
tgtgaacttgatcttgtactgcttggttgtgagtataacttgttgttttcatgcctgaattgtggtcttgcatattttcttagttggagttgttgtcggt |
318 |
Q |
| |
|
|| ||||||||| ||||| ||||||| ||||||||||| | |||||||||||| |||||||| ||||||||||||||| | ||| ||||| |||||||| |
|
|
| T |
11992093 |
tg-gaacttgattttgtattgcttggctgtgagtataattcgttgttttcatgtctgaattgcggtcttgcatattttgtaagtccgagttattgtcggt |
11991995 |
T |
|
| Q |
319 |
gtaatcagtgtctctagcaggtggtt-aagacaatgattgatttagtcggatactcattttgggtgatctattttgtggagttaataaccagatgtcgca |
417 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||| |||| |||| ||||||||| || |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11991994 |
gtaatccgtgtctctagcaggtggtttaagacaatgattaatttggtcgaatactcattgtgagtgatctattttgtggagttaataaccatgtgtcgca |
11991895 |
T |
|
| Q |
418 |
tgcatacattcattgtcgcgtggtgcccataattggttgggacc |
461 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11991894 |
agcatgcattcattgtcgcatggtgcccataattggttgggacc |
11991851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 637728 - 637798
Alignment:
| Q |
64 |
gtggagcaaagaccacgagtagatatcttaatagctgctatattgctaaggtaagggaaagggcgctccat |
134 |
Q |
| |
|
|||||||||||||||||||| || ||||||| ||||||| ||| ||||||||||||||| ||||||||| |
|
|
| T |
637728 |
gtggagcaaagaccacgagttgaaatcttaacagctgctgctttgttaaggtaagggaaagtgcgctccat |
637798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 273 - 374
Target Start/End: Original strand, 639046 - 639147
Alignment:
| Q |
273 |
ctgaattgtggtcttgcatattttcttagttggagttgttgtcggtgtaatcagtgtctctagcaggtggttaagacaatgattgatttagtcggatact |
372 |
Q |
| |
|
|||||||| ||| ||||||||||| | |||||||||| || ||||||||| |||||| ||| |||||||| |||| |||| ||| ||||||||||| |
|
|
| T |
639046 |
ctgaattggggtgttgcatattttgtaagttggagttacggttggtgtaatctgtgtcttcagctggtggttaggacatcgattaattaagtcggatact |
639145 |
T |
|
| Q |
373 |
ca |
374 |
Q |
| |
|
|| |
|
|
| T |
639146 |
ca |
639147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 110 - 461
Target Start/End: Original strand, 8377591 - 8377945
Alignment:
| Q |
110 |
taaggtaagggaaagggcgctccatttctt-attttatatatgtatttactggttg--attaaatgatgatgtttttaacatgtttatgtgttgtgccat |
206 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||| ||| || ||| ||||||||||||||||||||||||| |||| ||| |
|
|
| T |
8377591 |
taaggtaagggaaagggcgctccatttttttattttatatatgtatttacttgtttttataaaaggatgatgtttttaacatgtttatgtattgtatcat |
8377690 |
T |
|
| Q |
207 |
gcttatatactatgtg-aacttgatcttgtactgcttggttgtgagtataacttgttgttttcatgcctgaattgtggtcttgcatattttcttagttgg |
305 |
Q |
| |
|
|||||| | | || || ||||| ||||| ||||||||||||||||||| ||||||||| |||||||| |||| ||||||||||||||| ||||| | |
|
|
| T |
8377691 |
gcttattttgttagtataaattgattttgtattgcttggttgtgagtataaattgttgttt-catgcctggattgaggtcttgcatattttgttagtcag |
8377789 |
T |
|
| Q |
306 |
agttgttgtcggtgtaatcagtgtctctagcaggtggttaagacaatgattgatttagtcggatactcattttgggtgatctattttgtggagttaataa |
405 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| ||||| || || |||||||||||||||||||| |
|
|
| T |
8377790 |
cgttactgtcggtgtaatcaatgtctctagcaggtggttaagacagtgattaatttagtcggatattcattgtgagttgtctattttgtggagttaatat |
8377889 |
T |
|
| Q |
406 |
ccagatgtcgcatgcatacattcattgtcgcgtggtgcccataattggttgggacc |
461 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8377890 |
gcaggtgtcgcatgcatacattcattgttgcgtggtgcccataattggttgggacc |
8377945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 111 - 286
Target Start/End: Complemental strand, 5187569 - 5187393
Alignment:
| Q |
111 |
aaggtaagggaaagggcgctccatttctt-attttatatatgtatttactggttgattaaatgatgatgtttttaacatgtttatgtgttgtgccatgct |
209 |
Q |
| |
|
||||||||||||||| |||||||||| || |||||||||||||||||||| |||| | ||||||||| |||||| ||||||||||| |||| |||||| |
|
|
| T |
5187569 |
aaggtaagggaaaggtcgctccatttttttattttatatatgtatttacttgttgttaaaatgatgacgtttttgtcatgtttatgtattgtaacatgct |
5187470 |
T |
|
| Q |
210 |
tatatactatgtgaacttgatcttgtactgcttggttgtgagtataacttgttgttttcatgcctgaattgtggtct |
286 |
Q |
| |
|
|| ||||| ||||||||| | ||| | ||||||||||||||||||| || || |||||||||||| ||||| |||| |
|
|
| T |
5187469 |
tacttactacgtgaacttgcttttggattgcttggttgtgagtataattttttattttcatgcctggattgtagtct |
5187393 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 217 - 461
Target Start/End: Complemental strand, 58920 - 58690
Alignment:
| Q |
217 |
tatgtgaacttgatcttgtactgcttggttgtgagtataacttgttgttttcatgcctgaattgtggtcttgcatattttcttagttggagttgttgtcg |
316 |
Q |
| |
|
|||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | ||| || |
|
|
| T |
58920 |
tatgtgaacttgcttttgtattgcttggttgtgaatataacttgttgttttcatgcatgaattgtggtcttgcatattttgtaagt------------cg |
58833 |
T |
|
| Q |
317 |
gtgtaatcagtgtctctagcaggtggttaagacaatgattgatttagtcggatactcattttgggtgatctattttgtggagttaataaccagatgtcgc |
416 |
Q |
| |
|
||| |||| ||||||||||||||||||||||| |||||| |||||||||| |||||||| || | | | | ||||||||| ||||||||||| |||||| |
|
|
| T |
58832 |
gtgcaatctgtgtctctagcaggtggttaaga--atgattaatttagtcggttactcattatgagaggtgttttttgtggaattaataaccagctgtcgc |
58735 |
T |
|
| Q |
417 |
atgcatacattcattgtcgcgtggtgcccataattggttgggacc |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
58734 |
atgcatacattcattgtcgcgtggtgcccataattggttgggacc |
58690 |
T |
|
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