View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12545_low_9 (Length: 460)
Name: NF12545_low_9
Description: NF12545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12545_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 440
Target Start/End: Original strand, 33339189 - 33339611
Alignment:
| Q |
11 |
cagagacaatgatttgattgactccttgtactgatcaagtcattctaaccaaggtgttcaagcagcgtatcccattgatggagtacaacgacgttgcaag |
110 |
Q |
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| T |
33339189 |
cagagacaatgatttgattgactccttgtaccgatcaagtcattctaaccaaggtgttcaagcagcgtatccaattgatggagtacaacgacgatgcaag |
33339288 |
T |
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| Q |
111 |
taaatatggatgaaaaaacttcaagttgaggggtgcgtacccaacttagtgatgaattcacactttagggagagattgttggtatatgaagtgtgagtaa |
210 |
Q |
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| T |
33339289 |
taaacatggatgaaaaaacttcaagttgaggggtgcgtacccaacttagtgatgaattcacactttagggagagattgttggtatatcaag-------aa |
33339381 |
T |
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| Q |
211 |
aagtcacctgttggatgaaaaatgaatgttgaacacttcataagtgaaagatcatatatctactgtcttaaagtttggagtggctgtgtgtggtcactct |
310 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33339382 |
aagtcacatgttagatgaaaaatgaatgttgaacacttcataagtgaaagatcatatatctactgtcttaaagtttggagtggctgtgtgtggtcactct |
33339481 |
T |
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| Q |
311 |
aatacggagttcttacctgttagttagtgataactgtactctccctgtacatatttcgcttatataatgattattaattcttgaatatgattcatgtata |
410 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33339482 |
aatacggagttcttacttgttagttagtgataactgtactctctttatacatatttcgcttatataatgattattaattcttgaatatgattcatgtata |
33339581 |
T |
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| Q |
411 |
ggtggtcactaattgctgggaggttgcctg |
440 |
Q |
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| T |
33339582 |
ggtggtcactaattgctgggaggttgcctg |
33339611 |
T |
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