View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12546_high_1 (Length: 545)

Name: NF12546_high_1
Description: NF12546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12546_high_1
NF12546_high_1
[»] scaffold1195 (3 HSPs)
scaffold1195 (19-534)||(498-1013)
scaffold1195 (285-441)||(1513-1672)
scaffold1195 (94-181)||(1722-1809)
[»] chr7 (10 HSPs)
chr7 (305-534)||(15490723-15490951)
chr7 (77-264)||(15567622-15567809)
chr7 (348-534)||(15432367-15432555)
chr7 (180-303)||(15432552-15432675)
chr7 (131-221)||(15490971-15491061)
chr7 (334-434)||(15567488-15567588)
chr7 (440-513)||(16945028-16945101)
chr7 (352-438)||(6081810-6081896)
chr7 (453-532)||(6081667-6081746)
chr7 (448-534)||(15567334-15567418)
[»] scaffold1694 (2 HSPs)
scaffold1694 (94-181)||(1218-1305)
scaffold1694 (285-394)||(1355-1463)
[»] scaffold0227 (2 HSPs)
scaffold0227 (352-438)||(11685-11771)
scaffold0227 (448-532)||(11542-11626)
[»] chr5 (3 HSPs)
chr5 (352-438)||(29526769-29526855)
chr5 (448-532)||(29526914-29526998)
chr5 (440-532)||(39702473-39702565)
[»] chr6 (2 HSPs)
chr6 (352-438)||(18132507-18132593)
chr6 (448-532)||(18132652-18132736)
[»] chr1 (4 HSPs)
chr1 (352-438)||(10583309-10583395)
chr1 (352-438)||(49122737-49122823)
chr1 (453-532)||(10583166-10583245)
chr1 (453-532)||(49122594-49122673)


Alignment Details
Target: scaffold1195 (Bit Score: 460; Significance: 0; HSPs: 3)
Name: scaffold1195
Description:

Target: scaffold1195; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 19 - 534
Target Start/End: Complemental strand, 1013 - 498
Alignment:
Q  19 accagatacaagaggaatttgtgtatgcatagaggtatgaagaaaatgcttctactttagtatttgttgtttacgtaccttttaacatgtagagaaaagg 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  1013 accagatacaagaggaatttgtgtatgtatagaggtatgaagaaaatgcttctgctttagtatttgttgtttacgtaccttttaacatgtggagaaaagg 914  T
Q  119 taaataagccatggttgtttacacacatttctacaaaatgtacaaaacagatgattatagttaagaaaatgtacaaaacagaaatgaagtgcttcccaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  913 taaataagccatggttgtttacacacatttctacaaaatgtacaaaacagatgattatagttaagaaaatgtacaaaacagaaatgaagtgcttcccaaa 814  T
Q  219 ctaaggtattttcagttccttagaataggaagtatgttctcatttgcgacggactaaattactaccaacatgtcttgacactctacaagaattgtttgga 318  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  813 ctaaggtattttcagttccttagaataggaagtatgttctcatctgcgactgactaaattacaaccaacatgtcttgacactctacacgaattgtttgga 714  T
Q  319 agggaaagatccgacaacagtgttcaaattctagatgacattcacagaggaattttctgcatccctttcatatgcattctctaccttttcctcatttttc 418  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  713 tgggaaagatccgacaacagtgttcaaattctagatgacattcacagaggaattttctgcatccctttcttatgcattctctaccttttcctcatttttc 614  T
Q  419 acttttactgtctgaatgagaacgtcaacgactaccatttcaattcagattcctcttcttcatcagatataggtaaaagctctcaatcctcaggcttaaa 518  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  613 acttctactgtctgaatgagaacgtcaacgactaccattccaattcagattcctcttcttcatcagatataggtaaacgctgtcaatcctcaggcttaaa 514  T
Q  519 atgccaaagcagtgaa 534  Q
    ||||||||| ||||||    
T  513 atgccaaagtagtgaa 498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1195; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 285 - 441
Target Start/End: Complemental strand, 1672 - 1513
Alignment:
Q  285 aacatgtcttgacactctacaagaattgtttggaagggaaagatccgacaacagtgttcaaattctagatgacattcacagaggaattttctgcatccct 384  Q
    ||||||||||||| ||||| |||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| |||||||| |||||| ||||| |    
T  1672 aacatgtcttgacgctctaaaagaattgtt-ggaagggaaagatccaacaaaagtgttcaaattctagatgacattaacagaggatttttctacatcctt 1574  T
Q  385 ttcatatgcattctctacc----ttttcctcatttttcacttttactgtctgaatgagaac 441  Q
    ||| |||||||||||||||    ||||||||||||||||||| |||||||| |||||||||    
T  1573 ttcttatgcattctctaccttaattttcctcatttttcacttctactgtctaaatgagaac 1513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1195; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 94 - 181
Target Start/End: Complemental strand, 1809 - 1722
Alignment:
Q  94 taccttttaacatgtagagaaaaggtaaataagccatggttgtttacacacatttctacaaaatgtacaaaacagatgattatagtta 181  Q
    |||||||||||||||||| |||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1809 taccttttaacatgtagaaaaaaggtggataagccatggttgtttacacacctttctacaaaatgtacaaaacagatgattatagtta 1722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 198; Significance: 1e-107; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 305 - 534
Target Start/End: Complemental strand, 15490951 - 15490723
Alignment:
Q  305 aagaattgtttggaagggaaagatccgacaacagtgttcaaattctagatgacattcacagaggaattttctgcatccctttcatatgcattctctacct 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  15490951 aagaattgtttggaagggaaagatccgacaacagtgttcaaattctagatgacattcacagaggatttttctgcatccctttcttatgcattctctacct 15490852  T
Q  405 tttcctcatttttcacttttactgtctgaatgagaacgtcaacgactaccatttcaattcagattcctcttcttcatcagatataggtaaaagctctcaa 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||      
T  15490851 tttcctcatttttcacttttactgtctgaatgagaacgtcaacgactaccattccaattcagattcctcttcttcatcagatataggtaaaagctatc-t 15490753  T
Q  505 tcctcaggcttaaaatgccaaagcagtgaa 534  Q
    ||||||||||||||||||||||| ||||||    
T  15490752 tcctcaggcttaaaatgccaaagtagtgaa 15490723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 77 - 264
Target Start/End: Complemental strand, 15567809 - 15567622
Alignment:
Q  77 agtatttgttgtttacgtaccttttaacatgtagagaaaaggtaaataagccatggttgtttacacacatttctacaaaatgtacaaaacagatgattat 176  Q
    ||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15567809 agtatttattgtttgcgtaccttttaacatgtggagaaaaggtaaataagccatggttgtttacacacatttctacaaaatgtacaaaacagatgattat 15567710  T
Q  177 agttaagaaaatgtacaaaacagaaatgaagtgcttcccaaactaaggtattttcagttccttagaataggaagtatgttctcatttg 264  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  15567709 agttaagaaaatgtacaaaacagaaatgaagtgcttcccaaaccaaggaattttcagttccttagaataggaagtatgttctcatttg 15567622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 348 - 534
Target Start/End: Complemental strand, 15432555 - 15432367
Alignment:
Q  348 tctagatgacattcacagaggaattttctgcatccctttcatatgcattctctaccttttcctcatttttcacttttactgtctgaatgagaacgtcaac 447  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  15432555 tctagatgacattcacagaggaattttctgcatccctttcttatgcattctctgccttttcctcatttttcacttctactgtctgaatgagaacgtcaac 15432456  T
Q  448 gactaccatttcaattcagattcctcttcttcatcagatataggtaaa--agctctcaatcctcaggcttaaaatgccaaagcagtgaa 534  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||| ||||||    
T  15432455 gactaccattccaattccgattcctcttcttcatcagatataggtaaaacagctctctatcctcaggcttaaaatgccaaagtagtgaa 15432367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 180 - 303
Target Start/End: Complemental strand, 15432675 - 15432552
Alignment:
Q  180 taagaaaatgtacaaaacagaaatgaagtgcttcccaaactaaggtattttcagttccttagaataggaagtatgttctcatttgcgacggactaaatta 279  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15432675 taagaaaatgtgcaaaacagaaatgaagtgcttcccaaactaaggtattttcagttccttagaataggaagtatgttctcatttgcgacggactaaatta 15432576  T
Q  280 ctaccaacatgtcttgacactcta 303  Q
    ||||||||||||||||||||||||    
T  15432575 ctaccaacatgtcttgacactcta 15432552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 15491061 - 15490971
Alignment:
Q  131 ggttgtttacacacatttctacaaaatgtacaaaacagatgattatagttaagaaaatgtacaaaacagaaatgaagtgcttcccaaacta 221  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15491061 ggttatttacacacatttctacaaaatgtacaaaacagatgattatagttatgaaaatgtacaaaacagaaatgaagtgcttcccaaacta 15490971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 334 - 434
Target Start/End: Complemental strand, 15567588 - 15567488
Alignment:
Q  334 aacagtgttcaaattctagatgacattcacagaggaattttctgcatccctttcatatgcattctctaccttttcctcatttttcacttttactgtctga 433  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||| ||| ||||||||||    
T  15567588 aacagtgttcaaattctagatggcattcacagaggaattttctgcatccctttattatgcattctctaccttttcctcgtttttctcttctactgtctga 15567489  T
Q  434 a 434  Q
    |    
T  15567488 a 15567488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 440 - 513
Target Start/End: Complemental strand, 16945101 - 16945028
Alignment:
Q  440 acgtcaacgactaccatttcaattcagattcctcttcttcatcagatataggtaaaagctctcaatcctcaggc 513  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16945101 acgtcaacgactcccattccaattcagattcctcttcttcatcagatataggtaaaagctctctatcctcaggc 16945028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 352 - 438
Target Start/End: Complemental strand, 6081896 - 6081810
Alignment:
Q  352 gatgacattcacagaggaattttctgcatccctttcatatgcattctctaccttttcctcatttttcacttttactgtctgaatgag 438  Q
    |||||||||||| ||||||||||||||||||||||| | ||| |||||| ||||||||||||||||| ||| | |||||||||||||    
T  6081896 gatgacattcacggaggaattttctgcatccctttcttctgcgttctctgccttttcctcatttttctcttctgctgtctgaatgag 6081810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 453 - 532
Target Start/End: Complemental strand, 6081746 - 6081667
Alignment:
Q  453 ccatttcaattcagattcctcttcttcatcagatataggtaaaagctctcaatcctcaggcttaaaatgccaaagcagtg 532  Q
    ||||| |||| |||||||||||||||||||||||||||||| ||  |||| || ||| ||||||||||||||||| ||||    
T  6081746 ccattccaatccagattcctcttcttcatcagatataggtagaacgtctctatactctggcttaaaatgccaaagtagtg 6081667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 448 - 534
Target Start/End: Complemental strand, 15567418 - 15567334
Alignment:
Q  448 gactaccatttcaattcagattcctcttcttcatcagatataggtaaaagctctcaatcctcaggcttaaaatgccaaagcagtgaa 534  Q
    |||| ||||| ||||||| |||||||||||||||| ||||||||||||||||||  || ||| |||| |||||||||||| ||||||    
T  15567418 gactcccattccaattcaaattcctcttcttcatctgatataggtaaaagctct--atactctggctgaaaatgccaaagtagtgaa 15567334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1694 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold1694
Description:

Target: scaffold1694; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 94 - 181
Target Start/End: Original strand, 1218 - 1305
Alignment:
Q  94 taccttttaacatgtagagaaaaggtaaataagccatggttgtttacacacatttctacaaaatgtacaaaacagatgattatagtta 181  Q
    |||||||||||||||||| |||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1218 taccttttaacatgtagaaaaaaggtggataagccatggttgtttacacacctttctacaaaatgtacaaaacagatgattatagtta 1305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1694; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 285 - 394
Target Start/End: Original strand, 1355 - 1463
Alignment:
Q  285 aacatgtcttgacactctacaagaattgtttggaagggaaagatccgacaacagtgttcaaattctagatgacattcacagaggaattttctgcatccct 384  Q
    ||||||||||||| ||||| |||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| |||||||| |||||| ||||| |    
T  1355 aacatgtcttgacgctctaaaagaattgtt-ggaagggaaagatccaacaaaagtgttcaaattctagatgacattaacagaggatttttctacatcctt 1453  T
Q  385 ttcatatgca 394  Q
    ||| ||||||    
T  1454 ttcttatgca 1463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 352 - 438
Target Start/End: Complemental strand, 11771 - 11685
Alignment:
Q  352 gatgacattcacagaggaattttctgcatccctttcatatgcattctctaccttttcctcatttttcacttttactgtctgaatgag 438  Q
    |||||||||||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||| ||| | |||||||||||||    
T  11771 gatgacattcacggaggaattttctgcatccctttcttctgcgttctctaccttttcctcatttttctcttctgctgtctgaatgag 11685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 448 - 532
Target Start/End: Complemental strand, 11626 - 11542
Alignment:
Q  448 gactaccatttcaattcagattcctcttcttcatcagatataggtaaaagctctcaatcctcaggcttaaaatgccaaagcagtg 532  Q
    |||| ||||| |||| |||||||||||||||||||||||||||||| ||  |||| || ||| ||||||||||||||||| ||||    
T  11626 gactcccattccaatccagattcctcttcttcatcagatataggtagaacttctctatactctggcttaaaatgccaaagtagtg 11542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 352 - 438
Target Start/End: Original strand, 29526769 - 29526855
Alignment:
Q  352 gatgacattcacagaggaattttctgcatccctttcatatgcattctctaccttttcctcatttttcacttttactgtctgaatgag 438  Q
    |||||||||||| ||||||||||| ||||||||||| | |||||||||||||||||||||||||||| ||| | |||||||||||||    
T  29526769 gatgacattcacggaggaattttccgcatccctttcttctgcattctctaccttttcctcatttttctcttctgctgtctgaatgag 29526855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 448 - 532
Target Start/End: Original strand, 29526914 - 29526998
Alignment:
Q  448 gactaccatttcaattcagattcctcttcttcatcagatataggtaaaagctctcaatcctcaggcttaaaatgccaaagcagtg 532  Q
    |||| ||||| |||| ||||||| |||||||||||||||||||||| ||  |||| || ||| ||||||||||||||||| ||||    
T  29526914 gactcccattccaatccagattcttcttcttcatcagatataggtagaacgtctctatactctggcttaaaatgccaaagtagtg 29526998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 440 - 532
Target Start/End: Original strand, 39702473 - 39702565
Alignment:
Q  440 acgtcaacgactaccatttcaattcagattcctcttcttcatcagatataggtaaaagctctcaatcctcaggcttaaaatgccaaagcagtg 532  Q
    ||||||| |||| ||||  |||| |||||||||| ||||||||||||||||||| ||  |||| || ||| ||||||||||||||||| ||||    
T  39702473 acgtcaatgactcccataccaatgcagattcctcatcttcatcagatataggtagaatgtctctatactctggcttaaaatgccaaagtagtg 39702565  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 352 - 438
Target Start/End: Original strand, 18132507 - 18132593
Alignment:
Q  352 gatgacattcacagaggaattttctgcatccctttcatatgcattctctaccttttcctcatttttcacttttactgtctgaatgag 438  Q
    |||||||||||| ||||||||||||||||||||||| | ||  |||||||||||||||||||||||| ||| | |||||||||||||    
T  18132507 gatgacattcacggaggaattttctgcatccctttcttctgtgttctctaccttttcctcatttttctcttctgctgtctgaatgag 18132593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 448 - 532
Target Start/End: Original strand, 18132652 - 18132736
Alignment:
Q  448 gactaccatttcaattcagattcctcttcttcatcagatataggtaaaagctctcaatcctcaggcttaaaatgccaaagcagtg 532  Q
    |||| ||||| |||| |||||||||||||||||||||||||||||| ||  |||| || ||| ||||||||||||||||| ||||    
T  18132652 gactcccattccaatccagattcctcttcttcatcagatataggtagaacgtctctatactccggcttaaaatgccaaagaagtg 18132736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 352 - 438
Target Start/End: Complemental strand, 10583395 - 10583309
Alignment:
Q  352 gatgacattcacagaggaattttctgcatccctttcatatgcattctctaccttttcctcatttttcacttttactgtctgaatgag 438  Q
    |||||||||||| ||||||||||||||||||||||| | ||| |||||| ||||||||||||||||| ||| | |||||||||||||    
T  10583395 gatgacattcacggaggaattttctgcatccctttcttctgcgttctctgccttttcctcatttttctcttctgctgtctgaatgag 10583309  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 352 - 438
Target Start/End: Complemental strand, 49122823 - 49122737
Alignment:
Q  352 gatgacattcacagaggaattttctgcatccctttcatatgcattctctaccttttcctcatttttcacttttactgtctgaatgag 438  Q
    |||||||||||| ||||||||||||||||||||||| | ||| |||||| ||||||||||||||||| ||| | |||||||||||||    
T  49122823 gatgacattcacggaggaattttctgcatccctttcttctgcgttctctgccttttcctcatttttctcttctgctgtctgaatgag 49122737  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 453 - 532
Target Start/End: Complemental strand, 10583245 - 10583166
Alignment:
Q  453 ccatttcaattcagattcctcttcttcatcagatataggtaaaagctctcaatcctcaggcttaaaatgccaaagcagtg 532  Q
    ||||| |||| |||||||||||||||||||||||||||||| ||  |||| || ||| ||||||||||||||||| ||||    
T  10583245 ccattccaatccagattcctcttcttcatcagatataggtagaacgtctctatactctggcttaaaatgccaaagtagtg 10583166  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 453 - 532
Target Start/End: Complemental strand, 49122673 - 49122594
Alignment:
Q  453 ccatttcaattcagattcctcttcttcatcagatataggtaaaagctctcaatcctcaggcttaaaatgccaaagcagtg 532  Q
    ||||| |||| ||||||||||||||||||| |||||||||| ||  |||| || ||| ||||||||||||||||| ||||    
T  49122673 ccattccaatccagattcctcttcttcatctgatataggtagaacgtctctatactctggcttaaaatgccaaagtagtg 49122594  T

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