View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12546_high_2 (Length: 443)
Name: NF12546_high_2
Description: NF12546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12546_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 9e-71; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 11485257 - 11485077
Alignment:
| Q |
18 |
ctttttactaaaaatagtaaaggtacacctttaaaccatttttaagaaatttatatcagacacaccctcaaacatatatacgaggtatcaagttgaatat |
117 |
Q |
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| T |
11485257 |
ctttttactaaaaatagtaaaggtacacctttaaaccatttttaagaaatttatattagacacaccctcaaacatatatacgaggtacgaagttgaatat |
11485158 |
T |
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| Q |
118 |
catagagaatatgggaacaatacatagacnnnnnnntaataataaaagcctatgcaaccaaactaaatattttttcagaga |
198 |
Q |
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| T |
11485157 |
catagagaatatgggaacaatacatagacaaaaaaataataaagaaagcctatccaaccaaactaaatattttttcagaga |
11485077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 293 - 428
Target Start/End: Complemental strand, 11484948 - 11484813
Alignment:
| Q |
293 |
ttacctatatttttaataggctaaatcaactttaaacttattctattggactaatatgaatgaatctacacatttagattcaaaggtcttttgccaacaa |
392 |
Q |
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| T |
11484948 |
ttacctatatttttaataggctaaatcaactttaaacttattctattggactaatatgaatgaatctaaacatttagattcaaaggtcttttgccaacaa |
11484849 |
T |
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| Q |
393 |
gttgaacaagttgcgcatcttctcaagtttgttcat |
428 |
Q |
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| T |
11484848 |
gttgaacaagttgcgcatcttctcaagtttgttcat |
11484813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 11485041 - 11484981
Alignment:
| Q |
200 |
caaaactaaatatatagtatttggtggaatgtatgaatgagttttactatatcaaattgtc |
260 |
Q |
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| T |
11485041 |
caaaattaaatatatagtatttggtggaatgtatgaaagagttttactatatcaaattgtc |
11484981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 9472711 - 9472674
Alignment:
| Q |
19 |
tttttactaaaaatagtaaaggtacacctttaaaccat |
56 |
Q |
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| T |
9472711 |
tttttactaaaaatagtaaaggtccacctttgaaccat |
9472674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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