View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12546_high_2_N (Length: 321)

Name: NF12546_high_2_N
Description: NF12546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12546_high_2_N
NF12546_high_2_N
[»] chr7 (6 HSPs)
chr7 (1-306)||(18395911-18396225)
chr7 (47-106)||(27073633-27073692)
chr7 (47-106)||(27204621-27204680)
chr7 (10-59)||(23565313-23565363)
chr7 (13-93)||(36146678-36146759)
chr7 (12-100)||(40808414-40808503)
[»] chr8 (8 HSPs)
chr8 (12-114)||(11712258-11712361)
chr8 (12-93)||(32902442-32902524)
chr8 (12-90)||(29796578-29796656)
chr8 (64-145)||(7597380-7597462)
chr8 (64-114)||(8153572-8153622)
chr8 (37-90)||(3232092-3232145)
chr8 (37-114)||(8863333-8863409)
chr8 (38-86)||(18141659-18141706)
[»] chr2 (3 HSPs)
chr2 (1-114)||(4560904-4561019)
chr2 (37-81)||(28671797-28671841)
chr2 (12-86)||(36773387-36773462)
[»] scaffold0129 (1 HSPs)
scaffold0129 (13-93)||(19854-19933)
[»] chr4 (6 HSPs)
chr4 (37-152)||(21704109-21704225)
chr4 (37-152)||(3739397-3739511)
chr4 (12-86)||(6677306-6677380)
chr4 (12-93)||(36463657-36463738)
chr4 (47-90)||(4587792-4587835)
chr4 (59-92)||(43208174-43208207)
[»] chr1 (4 HSPs)
chr1 (12-86)||(8871315-8871390)
chr1 (42-98)||(2263271-2263327)
chr1 (12-88)||(28265821-28265898)
chr1 (64-112)||(25116407-25116455)
[»] chr5 (1 HSPs)
chr5 (37-111)||(5611451-5611524)
[»] chr3 (5 HSPs)
chr3 (37-111)||(21156738-21156811)
chr3 (37-90)||(40519479-40519532)
chr3 (37-90)||(2075350-2075403)
chr3 (42-86)||(9666754-9666797)
chr3 (37-93)||(37761765-37761820)


Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 18396225 - 18395911
Alignment:
Q  1 aagacattcaacctaaagttacctccttgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18396225 aagacattcaacctaaagttacctccttgatatccaaagtttctctctcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagt 18396126  T
Q  101 cccgagaaaatcgtatcacaattttcactaattgtgccacgatttcaagttacttaaaatcgttccacgattttcctctttcgtgccacaatttttcgaa 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18396125 tccgagaaaatcgtatcacaattttcactaattgtgccacgatttcaagttacttaaaatcgttccacgattttcctctttcgtgccacaatttttcgaa 18396026  T
Q  201 tcaaa---------accttaaccaaaatcgcgtcacgatttttgcaaatcacggcccaatttttgtcgatattttagacaaatttcaacatttgttttcc 291  Q
    |||||         ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18396025 tcaaaacctccaaaaccttaaccaaaatctcgtcacgatttttgcaaatcgcggcccaatttttgtcgattttttagacaaatttcaacatttgttttcc 18395926  T
Q  292 ttgatgatgtccatc 306  Q
    ||||| ||| |||||    
T  18395925 ttgattatggccatc 18395911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 27073692 - 27073633
Alignment:
Q  47 ctcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgag 106  Q
    |||||||||  |||| |||||| |||||||||||||||||||||||||| ||| ||||||    
T  27073692 ctcttgaagtcctacctaaaacttgaagaatgaagtcttatataatgcaaaagccccgag 27073633  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 27204621 - 27204680
Alignment:
Q  47 ctcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgag 106  Q
    |||||||||  |||| |||||| |||||||||||||||||||||||||| ||| ||||||    
T  27204621 ctcttgaagtcctacctaaaacttgaagaatgaagtcttatataatgcaaaagccccgag 27204680  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 23565313 - 23565363
Alignment:
Q  10 aacctaaagttacctcctt-gatacccaaagtttctcactcttgaagctct 59  Q
    ||||||||||||||||||| |||| || ||||||||| |||||||||||||    
T  23565313 aacctaaagttacctcctttgatatcccaagtttctctctcttgaagctct 23565363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 36146678 - 36146759
Alignment:
Q  13 ctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 93  Q
    |||||||||||||||| |||  || |||||| || ||||||||||||| |  |||| ||||||||||||| |||| ||||||    
T  36146678 ctaaagttacctcctttgatttcccaagtttttctctcttgaagctcttcccaaaaaatgaagaatgaagccttaaataatg 36146759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 40808503 - 40808414
Alignment:
Q  12 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagt 100  Q
    ||||||||||||||||| ||| | | |||||| || ||||| |||  ||||||| |||||||||||||||||  ||||||  ||||||||    
T  40808503 cctaaagttacctcctttgattctctaagtttatctctctttaagtcctacttataacatgaagaatgaagttctatatagagcacaagt 40808414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 11712258 - 11712361
Alignment:
Q  12 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaa 110  Q
    |||||||||||||| || ||||||| ||||||||| ||||||||||||||| |||||||| |||||||||  |||||||| |||||| ||||| ||||||    
T  11712258 cctaaagttacctcatttgataccctaagtttctctctcttgaagctctacctaaaacataaagaatgaaaccttatatagtgcacatgtcccaagaaaa 11712357  T
Q  111 tcgt 114  Q
    ||||    
T  11712358 tcgt 11712361  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 32902442 - 32902524
Alignment:
Q  12 cctaaagttacctcct-tgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 93  Q
    |||||||||||||| | ||||  || ||||||||| |||||||||| || || ||||||||||||||||||||||||| ||||    
T  32902442 cctaaagttacctcatctgatttcccaagtttctctctcttgaagccctcctcaaaacatgaagaatgaagtcttatacaatg 32902524  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 29796578 - 29796656
Alignment:
Q  12 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 90  Q
    ||||||||||||||||| |||  |  ||||||||| ||||||||| ||| || |||||||||||||||||| ||||||||    
T  29796578 cctaaagttacctcctttgatttctcaagtttctctctcttgaag-tctcctcaaaacatgaagaatgaagccttatata 29796656  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 7597462 - 7597380
Alignment:
Q  64 aaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaa-tcgtatcacaattttcactaattgtgccacgattt 145  Q
    |||||||||||||||||| |||||||| ||| ||| || |||||||| | ||  | | |||||||| ||||||||||||||||    
T  7597462 aaaacatgaagaatgaagccttatatagtgctcaaatctcgagaaaaattgtgccccgattttcaccaattgtgccacgattt 7597380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 8153622 - 8153572
Alignment:
Q  64 aaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgt 114  Q
    |||||||||||||||||| ||| ||||||| |||||  |||||||||||||    
T  8153622 aaaacatgaagaatgaagccttttataatgtacaagatccgagaaaatcgt 8153572  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 3232092 - 3232145
Alignment:
Q  37 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 90  Q
    ||||||||  ||||| | |||||||| |||||||||||||||||| ||||||||    
T  3232092 aagtttctttctcttaatgctctactcaaaacatgaagaatgaagccttatata 3232145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 8863409 - 8863333
Alignment:
Q  37 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgt 114  Q
    |||||| || |||||||||||| ||  |||||||||||||||||| |||||||| |||||| |  | |||||||||||    
T  8863409 aagtttttctctcttgaagctc-acccaaaacatgaagaatgaagccttatatagtgcacatgatctgagaaaatcgt 8863333  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 18141706 - 18141659
Alignment:
Q  38 agtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 86  Q
    |||||||| |||||||||||||||| |||| ||||||||||||| ||||    
T  18141706 agtttctctctcttgaagctctactcaaaa-atgaagaatgaagcctta 18141659  T

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Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 4561019 - 4560904
Alignment:
Q  1 aagacattcaac-ctaaagttacctcct-tgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaa 98  Q
    |||||| ||||| ||||||||| ||||| ||||  || |||||| || ||||||||| | | || ||||||||||||||||||||||||| |||||||||    
T  4561019 aagacactcaactctaaagttatctcctctgatttcctaagtttttctctcttgaagttattctaaaaacatgaagaatgaagtcttatacaatgcacaa 4560920  T
Q  99 gtcccgagaaaatcgt 114  Q
    ||||||||||||||||    
T  4560919 gtcccgagaaaatcgt 4560904  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 28671841 - 28671797
Alignment:
Q  37 aagtttctcactcttgaagctctacttaaaacatgaagaatgaag 81  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||||    
T  28671841 aagtttctctctcttgaagccctactcaaaacatgaagaatgaag 28671797  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 36773462 - 36773387
Alignment:
Q  12 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 86  Q
    ||||||||||||||||| |||  ||  |||||||| ||||||||||||||   |||| ||||||||||||||||||    
T  36773462 cctaaagttacctcctttgatttccctagtttctctctcttgaagctctatacaaaaaatgaagaatgaagtctta 36773387  T

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Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 19854 - 19933
Alignment:
Q  13 ctaaagttacctccttgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 93  Q
    |||||||||||||||||||  || ||||||| | |||||||||| ||||| |||||| ||||||||||||| |||||||||    
T  19854 ctaaagttacctccttgatttcccaagtttcactctcttgaagc-ctactcaaaacaagaagaatgaagtcatatataatg 19933  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 21704109 - 21704225
Alignment:
Q  37 aagtttctcactcttgaagc-tctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgtatcacaattttcactaattgt 135  Q
    ||||||||| |||||||||| |||||  |||||||||| |||||||||||| ||| |||||| |||| |  ||||||||  | |||||||  ||||| ||    
T  21704109 aagtttctctctcttgaagcctctacacaaaacatgaaaaatgaagtcttaaatagtgcacatgtcctgtcaaaatcgtgccccaattttacctaatcgt 21704208  T
Q  136 gccacgatttcaagtta 152  Q
    |||||||||||| ||||    
T  21704209 gccacgatttcacgtta 21704225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 3739397 - 3739511
Alignment:
Q  37 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgtatcacaattttcactaattgtg 136  Q
    ||||||||| ||||||||  | |||| ||||||||||||||||||||||| |||||||||| ||||||  ||||||||  | | |||| |||  ||| ||    
T  3739397 aagtttctctctcttgaaa-tgtactcaaaacatgaagaatgaagtcttaaataatgcacatgtcccgtcaaaatcgtgcctcgatttacacacattttg 3739495  T
Q  137 ccacgatttcaagtta 152  Q
    ||||||||||| ||||    
T  3739496 ccacgatttcacgtta 3739511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 6677380 - 6677306
Alignment:
Q  12 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 86  Q
    ||||||||||||||||| ||||||| || ||||||  ||||||||| ||||| |||||||||||||||||| ||||    
T  6677380 cctaaagttacctcctttgataccctaaatttctctttcttgaagc-ctactcaaaacatgaagaatgaagcctta 6677306  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 36463657 - 36463738
Alignment:
Q  12 cctaaagttacctcct-tgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 93  Q
    |||||||||||||||| ||||  || |||||| || |||||||||||||||| |||| ||||||||||||| |||| ||||||    
T  36463657 cctaaagttacctcctatgatttcccaagtttttctctcttgaagctctactcaaaa-atgaagaatgaagccttaaataatg 36463738  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 4587835 - 4587792
Alignment:
Q  47 ctcttgaagctctacttaaaacatgaagaatgaagtcttatata 90  Q
    ||||||||||||| || |||||||||||||||||||||| ||||    
T  4587835 ctcttgaagctctcctcaaaacatgaagaatgaagtcttttata 4587792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 43208174 - 43208207
Alignment:
Q  59 tacttaaaacatgaagaatgaagtcttatataat 92  Q
    |||| |||||||||||||||||||||||||||||    
T  43208174 tactcaaaacatgaagaatgaagtcttatataat 43208207  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 8871315 - 8871390
Alignment:
Q  12 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 86  Q
    ||||||||||||| ||| |||| ||  |||||||| |||||||||||||||  |||||||||||||||||| ||||    
T  8871315 cctaaagttacctgctttgatatccctagtttctctctcttgaagctctaccaaaaacatgaagaatgaagcctta 8871390  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 2263271 - 2263327
Alignment:
Q  42 tctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaa 98  Q
    |||| ||||||| |||||||  |||||||||||||||||| |||||||| |||||||    
T  2263271 tctctctcttgacgctctacacaaaacatgaagaatgaagccttatatagtgcacaa 2263327  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 28265821 - 28265898
Alignment:
Q  12 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttata 88  Q
    ||||||||||||||||| |||  ||  |||||||| ||||||||||||| |  |||| ||||||||||||| ||||||    
T  28265821 cctaaagttacctcctttgatttccctagtttctctctcttgaagctcttcccaaaaaatgaagaatgaagccttata 28265898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 25116455 - 25116407
Alignment:
Q  64 aaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatc 112  Q
    |||||||||||||||||| |||||||| |||||| | || |||||||||    
T  25116455 aaaacatgaagaatgaagacttatatagtgcacatgacctgagaaaatc 25116407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 5611451 - 5611524
Alignment:
Q  37 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaat 111  Q
    ||||||||| |||||||||||||  | ||||||||||||||||||||||| || ||| ||||| | |||||||||    
T  5611451 aagtttctctctcttgaagctctt-tcaaaacatgaagaatgaagtcttaaattatgtacaagactcgagaaaat 5611524  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 21156738 - 21156811
Alignment:
Q  37 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaat 111  Q
    ||||||||| |||||||||||||  | ||||||||||||||||||||||| || ||| ||||| | |||||||||    
T  21156738 aagtttctctctcttgaagctctt-tcaaaacatgaagaatgaagtcttaaattatgtacaagactcgagaaaat 21156811  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 40519479 - 40519532
Alignment:
Q  37 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 90  Q
    ||||||||| |||||||||||||||| || |||||| |||||||| ||||||||    
T  40519479 aagtttctctctcttgaagctctactcaatacatgatgaatgaagccttatata 40519532  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 2075350 - 2075403
Alignment:
Q  37 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 90  Q
    ||||||||| ||||||||||   ||| |||||||||||||||||| ||||||||    
T  2075350 aagtttctctctcttgaagcctcactcaaaacatgaagaatgaagccttatata 2075403  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 9666754 - 9666797
Alignment:
Q  42 tctcactcttgaagctctacttaaaacatgaagaatgaagtctta 86  Q
    |||| |||||||||||||||| |||| ||||||||||||||||||    
T  9666754 tctctctcttgaagctctactcaaaa-atgaagaatgaagtctta 9666797  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 37761765 - 37761820
Alignment:
Q  37 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 93  Q
    ||||| ||| |||||||||| | ||| |||||||||||||| |||||||||||||||    
T  37761765 aagttactctctcttgaagc-caactaaaaacatgaagaataaagtcttatataatg 37761820  T

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