View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12546_high_3_N (Length: 320)
Name: NF12546_high_3_N
Description: NF12546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12546_high_3_N |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 65 - 320
Target Start/End: Complemental strand, 734739 - 734484
Alignment:
| Q |
65 |
ctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcgttgaaagattttcc |
164 |
Q |
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| T |
734739 |
ctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttcc |
734640 |
T |
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| Q |
165 |
aggtgttgaagaagtgataactgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggttttggagagggttcagaagaag |
264 |
Q |
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| T |
734639 |
aggtgttgaagaagtgatagctgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggttttggaaagggttcagaagaag |
734540 |
T |
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| Q |
265 |
agtcacaggaaggttgagcttctcactccgatcccaattcctcctgaggaggaaaa |
320 |
Q |
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| T |
734539 |
agtcataggaaggttgagcttctttctccgatcccaattgctcctgaggaggaaaa |
734484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 65 - 320
Target Start/End: Complemental strand, 45391131 - 45390876
Alignment:
| Q |
65 |
ctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcgttgaaagattttcc |
164 |
Q |
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| T |
45391131 |
ctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttcc |
45391032 |
T |
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| Q |
165 |
aggtgttgaagaagtgataactgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggttttggagagggttcagaagaag |
264 |
Q |
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| T |
45391031 |
aggtgttgaagaagtgataactgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggttttggaaagggttcagaagaag |
45390932 |
T |
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| Q |
265 |
agtcacaggaaggttgagcttctcactccgatcccaattcctcctgaggaggaaaa |
320 |
Q |
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| T |
45390931 |
agtcatagaaaggttgagcttctttctccgatcccaattgctcctgaggaggaaaa |
45390876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 82 - 320
Target Start/End: Complemental strand, 45386745 - 45386507
Alignment:
| Q |
82 |
cctccggcagagattttgctgaaagttttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcgttgaaagattttccaggtgttgaagaagtga |
181 |
Q |
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| T |
45386745 |
cctccagcagagattttgctgagagttttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcattgaaagattttccaggtgttgaagaagtga |
45386646 |
T |
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| Q |
182 |
taactgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggttttggagagggttcagaagaagagtcacaggaaggttga |
281 |
Q |
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| T |
45386645 |
taactgattgcaaatctcatatggtggttgtgaaaggagagaaagcagagccattgaaggttttggagagggttcagaagaagagtcacaggaaggttga |
45386546 |
T |
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| Q |
282 |
gcttctcactccgatcccaattcctcctgaggaggaaaa |
320 |
Q |
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| T |
45386545 |
gcttctttctccgatcccaattgctcctgaggaggaaaa |
45386507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 301
Target Start/End: Complemental strand, 40578088 - 40577944
Alignment:
| Q |
157 |
gattttccaggtgttgaagaagtgataactgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggttttggagagggttc |
256 |
Q |
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|||||| |||| |||||||| ||| | ||||||||||| ||||| | ||| |||| |||||||| |||||||| |||||||||||| | || || |||| |
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| T |
40578088 |
gatttttcaggggttgaagatgtggttactgattgcaaatctcacaaggttattgttaaaggagaaaaagcggatccattgaaggttcttgaaagagttc |
40577989 |
T |
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| Q |
257 |
agaagaagagtcacaggaaggttgagcttctcactccgatcccaa |
301 |
Q |
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| T |
40577988 |
agaggaagagtcatagacaagttgagcttctttctccgatcccaa |
40577944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 40578235 - 40578165
Alignment:
| Q |
98 |
tgctgaaagttttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcgttgaaagattttccaggt |
168 |
Q |
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| T |
40578235 |
tgcttaaagtcttcatgcattgtgaaggttgtgctcgtaaagttcgtcgttcactcaaaggttttccaggt |
40578165 |
T |
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