View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12546_high_5 (Length: 340)
Name: NF12546_high_5
Description: NF12546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12546_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 69 - 324
Target Start/End: Complemental strand, 734739 - 734484
Alignment:
| Q |
69 |
ctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttcc |
168 |
Q |
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| T |
734739 |
ctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttcc |
734640 |
T |
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| Q |
169 |
aggtgttgaagaagtgataactgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggttttggagagggttcagaagaag |
268 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
734639 |
aggtgttgaagaagtgatagctgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggttttggaaagggttcagaagaag |
734540 |
T |
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| Q |
269 |
agtcacaggaaggttgagcttctcactccgatcccaattcctcctgaggaggaaaa |
324 |
Q |
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||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
734539 |
agtcataggaaggttgagcttctttctccgatcccaattgctcctgaggaggaaaa |
734484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 69 - 324
Target Start/End: Complemental strand, 45391131 - 45390876
Alignment:
| Q |
69 |
ctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttcc |
168 |
Q |
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| T |
45391131 |
ctgctgttcctgcgccacctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttcc |
45391032 |
T |
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| Q |
169 |
aggtgttgaagaagtgataactgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggttttggagagggttcagaagaag |
268 |
Q |
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| T |
45391031 |
aggtgttgaagaagtgataactgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggttttggaaagggttcagaagaag |
45390932 |
T |
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| Q |
269 |
agtcacaggaaggttgagcttctcactccgatcccaattcctcctgaggaggaaaa |
324 |
Q |
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||||| || |||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
45390931 |
agtcatagaaaggttgagcttctttctccgatcccaattgctcctgaggaggaaaa |
45390876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 86 - 324
Target Start/End: Complemental strand, 45386745 - 45386507
Alignment:
| Q |
86 |
cctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttccaggtgttgaagaagtga |
185 |
Q |
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| T |
45386745 |
cctccagcagagattttgctgagagttttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcattgaaagattttccaggtgttgaagaagtga |
45386646 |
T |
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| Q |
186 |
taactgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggttttggagagggttcagaagaagagtcacaggaaggttga |
285 |
Q |
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| T |
45386645 |
taactgattgcaaatctcatatggtggttgtgaaaggagagaaagcagagccattgaaggttttggagagggttcagaagaagagtcacaggaaggttga |
45386546 |
T |
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| Q |
286 |
gcttctcactccgatcccaattcctcctgaggaggaaaa |
324 |
Q |
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|||||| |||||||||||||| |||||||||||||||| |
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| T |
45386545 |
gcttctttctccgatcccaattgctcctgaggaggaaaa |
45386507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 161 - 305
Target Start/End: Complemental strand, 40578088 - 40577944
Alignment:
| Q |
161 |
gattttccaggtgttgaagaagtgataactgattgcaagtctcatacggtggttgtgaaaggagagaaagcggagccattgaaggttttggagagggttc |
260 |
Q |
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|||||| |||| |||||||| ||| | ||||||||||| ||||| | ||| |||| |||||||| |||||||| |||||||||||| | || || |||| |
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| T |
40578088 |
gatttttcaggggttgaagatgtggttactgattgcaaatctcacaaggttattgttaaaggagaaaaagcggatccattgaaggttcttgaaagagttc |
40577989 |
T |
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| Q |
261 |
agaagaagagtcacaggaaggttgagcttctcactccgatcccaa |
305 |
Q |
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| T |
40577988 |
agaggaagagtcatagacaagttgagcttctttctccgatcccaa |
40577944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 40578235 - 40578165
Alignment:
| Q |
102 |
tgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttccaggt |
172 |
Q |
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|||| ||||| ||||||||||||||| | |||||||| ||||||||||| || | |||| |||||||||| |
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| T |
40578235 |
tgcttaaagtcttcatgcattgtgaaggttgtgctcgtaaagttcgtcgttcactcaaaggttttccaggt |
40578165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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