View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12546_high_6_N (Length: 301)

Name: NF12546_high_6_N
Description: NF12546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12546_high_6_N
NF12546_high_6_N
[»] chr5 (8 HSPs)
chr5 (117-289)||(33355611-33355783)
chr5 (117-289)||(33543806-33543978)
chr5 (12-63)||(33355499-33355550)
chr5 (16-63)||(33544037-33544084)
chr5 (117-176)||(33547732-33547791)
chr5 (117-175)||(33549624-33549682)
chr5 (25-63)||(33547850-33547888)
chr5 (25-63)||(33546888-33546926)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 117 - 289
Target Start/End: Original strand, 33355611 - 33355783
Alignment:
Q  117 tagacatgagttggtaggttggtggatggtttgatatttaatactataagtctactactatgatgtatgataaatttatcatcaaaaggtagcataacca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33355611 tagacatgagttggtaggttggtggatggtttgatatttaatactactagtctactactatgatgtatgataaatttatcatcaaaaggtagcataacta 33355710  T
Q  217 attgatgttgcattaaaagagacatgaaaggtgtggagcggtggcggatgtagagtacgacaaagacgacatt 289  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33355711 attgatgttgcgttaaaagagacatgaaaggtgtggagcggtggcggatgtagagtacgacaaagacgacatt 33355783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 117 - 289
Target Start/End: Complemental strand, 33543978 - 33543806
Alignment:
Q  117 tagacatgagttggtaggttggtggatggtttgatatttaatactataagtctactactatgatgtatgataaatttatcatcaaaaggtagcataacca 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33543978 tagacatgagttggtaggtttgtggatggtttgatatttaatactactagtctactactatgatgtatgataaatttatcatcaaaaggtagcataacca 33543879  T
Q  217 attgatgttgcattaaaagagacatgaaaggtgtggagcggtggcggatgtagagtacgacaaagacgacatt 289  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33543878 attgatgttgcgttaaaaaagacatgaaaggtgtggagcggtggcggatgtagagtacgacaaagacgacatt 33543806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 33355499 - 33355550
Alignment:
Q  12 ataggtggtgtttataaagagcttactaaaatgatttttaccacacatgata 63  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33355499 ataggtggtgttcataaagagcttactaaaatgatttttaccacacatgata 33355550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 33544084 - 33544037
Alignment:
Q  16 gtggtgtttataaagagcttactaaaatgatttttaccacacatgata 63  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  33544084 gtggtgttcataaagagcttactaaaatgatttttaccacacatgata 33544037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 33547791 - 33547732
Alignment:
Q  117 tagacatgagttggtaggttggtggatggtttgatatttaatactataagtctactacta 176  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||  |||| |||||||    
T  33547791 tagacatgagttggtaggttggtggatggtttggtatttaatactactagtccactacta 33547732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 33549682 - 33549624
Alignment:
Q  117 tagacatgagttggtaggttggtggatggtttgatatttaatactataagtctactact 175  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||  |||| ||||||    
T  33549682 tagacatgagttggtaggttggtggatggtttggtatttaatactactagtccactact 33549624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 33547888 - 33547850
Alignment:
Q  25 ataaagagcttactaaaatgatttttaccacacatgata 63  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33547888 ataaagagcttactaaaatgatttttaccacacatgata 33547850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 33546926 - 33546888
Alignment:
Q  25 ataaagagcttactaaaatgatttttaccacacatgata 63  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  33546926 ataaagagcttactaaaataatttttaccacacatgata 33546888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University