View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12546_high_7 (Length: 267)
Name: NF12546_high_7
Description: NF12546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12546_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 16843341 - 16843101
Alignment:
| Q |
19 |
gttgcaagttccattttgggagaacaatgtgtaacttcaaaggctgctaccttaactaatttgtcaaaaagagttcatcatattagttgtttcaatattg |
118 |
Q |
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| T |
16843341 |
gttgcaagctccattttgggagaacaatgtgtaacttcaaaggctgataccttaactaatttgtcaaaaagagttcatcatattagttttttcaatattg |
16843242 |
T |
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| Q |
119 |
acgaacaattcaaattcagcttgattcttttcaaaaaagtggaatccttgcgaacttttcttgannnnnnnccacctgaatcaaatttgggcgtgtttcc |
218 |
Q |
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| T |
16843241 |
acgaacaattcaaattcagcttgattcccttcaaaaaagtggaatccttgcgaacttttcttgatttttttccacctgaatcaaatttgggcgtgtttcc |
16843142 |
T |
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| Q |
219 |
atcaatcactcctctccgagcattacgtacaagttcttctc |
259 |
Q |
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| T |
16843141 |
atcaatcactcctctccgagcattacgtacaagttcttctc |
16843101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 16796583 - 16796541
Alignment:
| Q |
140 |
tgattcttttcaaaaaagtggaatccttgcgaacttttcttga |
182 |
Q |
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| T |
16796583 |
tgattcctttcaaaaaagttgaatccttgcgaacctttcttga |
16796541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 17068920 - 17068878
Alignment:
| Q |
140 |
tgattcttttcaaaaaagtggaatccttgcgaacttttcttga |
182 |
Q |
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| T |
17068920 |
tgattcctttcaaaaaagttgaatccttgcgaacctttcttga |
17068878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 16780521 - 16780476
Alignment:
| Q |
211 |
gtgtttccatcaatcactcctctccgagcattacgtacaagttctt |
256 |
Q |
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| T |
16780521 |
gtgtttccatctgtcactcctctccgagctttacgtacaaggtctt |
16780476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 16796509 - 16796464
Alignment:
| Q |
211 |
gtgtttccatcaatcactcctctccgagcattacgtacaagttctt |
256 |
Q |
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| T |
16796509 |
gtgttgccatcaatcgttcctctccgagctttacgtacaagttctt |
16796464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 16868747 - 16868787
Alignment:
| Q |
140 |
tgattcttttcaaaaaagtggaatccttgcgaacttttctt |
180 |
Q |
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| T |
16868747 |
tgattcctttcaaaaaagttgaatccttgcgaacctttctt |
16868787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 13377434 - 13377390
Alignment:
| Q |
212 |
tgtttccatcaatcactcctctccgagcattacgtacaagttctt |
256 |
Q |
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| T |
13377434 |
tgtttccatcaatcactcctctccgagctttacgtacaagttctt |
13377390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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