View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12546_low_1 (Length: 760)

Name: NF12546_low_1
Description: NF12546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12546_low_1
NF12546_low_1
[»] chr1 (1 HSPs)
chr1 (33-744)||(46642881-46643580)


Alignment Details
Target: chr1 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 33 - 744
Target Start/End: Original strand, 46642881 - 46643580
Alignment:
Q  33 caaacttgatgcacttttcctccacaacaacaaattccacttttctttaccagacactttcggacagatgccagcttctgttgttgtgttcgcgaacaat 132  Q
    ||||||||||||||||||| || |||||||||||||| | |||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||    
T  46642881 caaacttgatgcacttttcatcaacaacaacaaattcaaattttctttaccagaaaatttcggaaagatgccagcttctgttgttgtgttcgcgaacaat 46642980  T
Q  133 gatatacaaggttgtattccatcgagtgtagcgaatatgaaggatacaatcaatgagataattatgacgaacagcaaaatgaaaggctgtttacctaatg 232  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  46642981 gatatacaaggttgtattccatcgagtgtagcgaatatgaaagatacaatcaacgagataattatgacgaacagcagaatgaaaggctgtttacctaatg 46643080  T
Q  233 atataggaaaattggataaagtgacagtgtttgatgttagttttaatgagtttgttggtgaattgcctgaaagtatcagtggaatgaaaagtttggagca 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46643081 atataggaaaattggataaagtgacagtgtttgatgttagttttaatgagtttgttggtgaattgcctgaaagtatcagtggaatgaaaagtttggagca 46643180  T
Q  333 gttgaatgtggcacataataaattttctggtgttattcctgagagtatatgtagattgccaaggttggagaatttgacgtattcgtataattactttagt 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| | |||    
T  46643181 gttgaatgtggcacataataaattttctggtgttattcctgagagtatatgtagattgccaaggttgaagaatttaacgtattcgtataattacctgagt 46643280  T
Q  433 ggtgaatcagagatttgtgttaagttggatgataaggatgatacaaagaattgtattcctcatatgcatttccaaagatcgagtcatgggtgtgatgctt 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46643281 ggtgaatcagagatttgtgttaagttggatgataaggatgatacaaagaattgtattcctcatatgcatttccaaagatcgagtcatgggtgtgatgctt 46643380  T
Q  533 tttatgaacatcctgttcattgtactggtgttggttgttcttttgtaactctaccgccaacaccaccttcttgtccannnnnnnnnnnnnnnnnnnnggc 632  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||                    |||    
T  46643381 tttatgaacatcctgttcattgtactggtgttggttgttcttttgtaactctaccgccaccaccaccttcttgtcca------cctcctcctcctccggc 46643474  T
Q  633 agcttaccaccattatctctgatgagataagagcttggccttggaatattttattcttttcttttttgttctttcaaattcagaggtagtgtttacttgg 732  Q
    |||||||||||||||||||||||||||||||||      ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  46643475 agcttaccaccattatctctgatgagataagag------cttggaacattttattcttttcttttttgttctttcaaattcagagggagtgtttacttga 46643568  T

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