View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12546_low_10 (Length: 280)
Name: NF12546_low_10
Description: NF12546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12546_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 21184673 - 21184884
Alignment:
| Q |
16 |
gccactccaaataaaaagaaaactagtacagaattgaaacagacgtagtaggtatatataacgatcaaatagctcataaaagattgtgacataaagtaaa |
115 |
Q |
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| T |
21184673 |
gccactccaaataaaaggaaaactagtacagaattgaaacagacgtagtgggtatatataacaatcaaatagctcataaaagattgtgacataaagtaaa |
21184772 |
T |
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| Q |
116 |
aacattaagcatgagcacaaactcattagctttattattgtc---caactttaatatgcaggtagatcatgaatccatggaaatcaagtacttctgtcct |
212 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21184773 |
aacattaagcatgagcacaaactcattagctttattagtgtccaacaacttaaatatgcaggtagatcatgaatccatggaaatcaagtacttctgtcct |
21184872 |
T |
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| Q |
213 |
gattgaatccat |
224 |
Q |
| |
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|||||||||||| |
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| T |
21184873 |
gattgaatccat |
21184884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 21184957 - 21185005
Alignment:
| Q |
222 |
catttagccacaccaaattaatacatcgatgcttctgaagttctttctt |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21184957 |
catttagccacaccaaattaatacatcgatgcttctgaagttctttctt |
21185005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 20190528 - 20190496
Alignment:
| Q |
192 |
gaaatcaagtacttctgtcctgattgaatccat |
224 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
20190528 |
gaaatcaagtacttctgtcctgattgaatccat |
20190496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 44275040 - 44275008
Alignment:
| Q |
192 |
gaaatcaagtacttctgtcctgattgaatccat |
224 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
44275040 |
gaaatcaagtacttctgtcctgattgaatccat |
44275008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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