View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12546_low_12 (Length: 267)

Name: NF12546_low_12
Description: NF12546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12546_low_12
NF12546_low_12
[»] chr5 (4 HSPs)
chr5 (4-157)||(614539-614692)
chr5 (198-251)||(614765-614818)
chr5 (86-154)||(37442582-37442650)
chr5 (115-154)||(8055180-8055220)
[»] chr3 (1 HSPs)
chr3 (88-156)||(7238950-7239018)
[»] chr4 (6 HSPs)
chr4 (86-157)||(42096718-42096789)
chr4 (93-139)||(23806237-23806283)
chr4 (86-150)||(684202-684267)
chr4 (86-154)||(53979039-53979108)
chr4 (99-135)||(16962863-16962899)
chr4 (83-154)||(33648224-33648296)
[»] chr8 (2 HSPs)
chr8 (85-154)||(34072905-34072975)
chr8 (119-154)||(38006564-38006600)
[»] chr1 (1 HSPs)
chr1 (86-154)||(14210628-14210696)


Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 4 - 157
Target Start/End: Original strand, 614539 - 614692
Alignment:
Q  4 aggctttgtaatgattctggctccaccaatgaatacaaccgtgcaattacgtactatatgtctacaacacattactatggcaagttaagtcacgttgaaa 103  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  614539 aggctttgtaatgagtctggctccgccaatgaatacaaccgtgcaattacgtactatatgtctacaacacattactatggcaagttaagtcacattgaaa 614638  T
Q  104 atacatctatgcgagttaactcacgctcgactttttaacgggaatgagcaattc 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  614639 atacatctatgcgagttaactcacgctcgactttttaacgggaatgagcaattc 614692  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 614765 - 614818
Alignment:
Q  198 ttattattgaagcaagatattcttgaattgcattaatgtgatatcgcattgttg 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  614765 ttattattgaagcaagatattcttgaattgcattaatgtgatatcgcattgttg 614818  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 37442582 - 37442650
Alignment:
Q  86 agttaagtcacgttgaaaatacatctatgcgagttaactcacgctcgactttttaacgggaatgagcaa 154  Q
    |||||| ||| |||||||||||||||    ||||||||||||||||| || ||| ||||||||||||||    
T  37442582 agttaactcatgttgaaaatacatctgcatgagttaactcacgctcggctatttgacgggaatgagcaa 37442650  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 8055220 - 8055180
Alignment:
Q  115 cgagttaactcacgctcgact-ttttaacgggaatgagcaa 154  Q
    ||||||||||||||||||||| |||||||||||| ||||||    
T  8055220 cgagttaactcacgctcgactattttaacgggaacgagcaa 8055180  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 7238950 - 7239018
Alignment:
Q  88 ttaagtcacgttgaaaatacatctatgcgagttaactcacgctcgactttttaacgggaatgagcaatt 156  Q
    |||| ||| ||||||||||||  || | ||||||| |||||||||||||||| ||||||| ||||||||    
T  7238950 ttaactcatgttgaaaatacacttacgtgagttaattcacgctcgacttttttacgggaacgagcaatt 7239018  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 42096789 - 42096718
Alignment:
Q  86 agttaagtcacgttgaaaatacatctatgcgagttaactcacgctcgactttttaacgggaatgagcaattc 157  Q
    |||||| |||||||||||||  ||||| | ||||||||||||| |||||||||  ||| ||| |||||||||    
T  42096789 agttaactcacgttgaaaatgtatctacgtgagttaactcacgttcgacttttctacgagaacgagcaattc 42096718  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 23806283 - 23806237
Alignment:
Q  93 tcacgttgaaaatacatctatgcgagttaactcacgctcgacttttt 139  Q
    |||||||||||||||| ||| | ||||||||||||| ||||||||||    
T  23806283 tcacgttgaaaatacacctacgtgagttaactcacgttcgacttttt 23806237  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 684202 - 684267
Alignment:
Q  86 agttaagtcacgttgaaaatacatctatgcgagttaactcacgctcgact-ttttaacgggaatga 150  Q
    |||||| ||||| ||| |||||||||  | ||||||||||| |||||||| |||||||||||||||    
T  684202 agttaattcacgatgagaatacatctgcgtgagttaactcatgctcgactattttaacgggaatga 684267  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 53979108 - 53979039
Alignment:
Q  86 agttaagtcacgttgaaaatacatctatgcgagttaactcacgctcgact-ttttaacgggaatgagcaa 154  Q
    |||||| ||||| ||||||||||  | || ||||||||||||| |||||| ||||||| |||||||||||    
T  53979108 agttaactcacgctgaaaatacacatgtgtgagttaactcacgttcgactattttaacaggaatgagcaa 53979039  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 16962899 - 16962863
Alignment:
Q  99 tgaaaatacatctatgcgagttaactcacgctcgact 135  Q
    |||||||||||||| | ||||||||||||||||||||    
T  16962899 tgaaaatacatctacgtgagttaactcacgctcgact 16962863  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 33648296 - 33648224
Alignment:
Q  83 gcaagttaagtcacgttgaaaatacatctatgcgagttaactcacgctcgact-ttttaacgggaatgagcaa 154  Q
    ||||||||| ||||| ||| |||||||||  |  ||||||||||| ||||||| |||| ||||||||||||||    
T  33648296 gcaagttaactcacgctgagaatacatctgcgttagttaactcacactcgactattttgacgggaatgagcaa 33648224  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 34072905 - 34072975
Alignment:
Q  85 aagttaagtcacgttgaaaatacatctatgcgagttaactcacgctcgact-ttttaacgggaatgagcaa 154  Q
    ||||||| ||||| ||| |||||| ||| | ||||||||||| ||||| || |||||||||||||||||||    
T  34072905 aagttaactcacgctgagaatacacctacgtgagttaactcatgctcgcctattttaacgggaatgagcaa 34072975  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 154
Target Start/End: Original strand, 38006564 - 38006600
Alignment:
Q  119 ttaactcacgctcgact-ttttaacgggaatgagcaa 154  Q
    ||||||||||||||||| |||||||||||||||||||    
T  38006564 ttaactcacgctcgactattttaacgggaatgagcaa 38006600  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 14210696 - 14210628
Alignment:
Q  86 agttaagtcacgttgaaaatacatctatgcgagttaactcacgctcgactttttaacgggaatgagcaa 154  Q
    |||||| ||||||||||||| |||||  |   |||||||||| ||||||| ||| ||||||||||||||    
T  14210696 agttaactcacgttgaaaatgcatctgcgtttgttaactcacactcgactatttgacgggaatgagcaa 14210628  T

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