View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12546_low_14 (Length: 246)
Name: NF12546_low_14
Description: NF12546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12546_low_14 |
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| [»] scaffold0511 (1 HSPs) |
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| [»] scaffold0230 (1 HSPs) |
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| [»] scaffold0133 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 16843066 - 16842837
Alignment:
| Q |
1 |
gtacttggaactttatgaaagtgatactgaaactcttcctgagtctatttgcagcctaagaaatttacaaacactaaaacttgaatgttgttacaacctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
16843066 |
gtacttggaactttatgaaagtgatactgaaactcttcctgagtctatttgcagcctaagaaaattacaaacactaaaacttgaatgttgttacaacctt |
16842967 |
T |
|
| Q |
101 |
tattgtcttcccaacaaattgacacagcttcaagatctcagacatcttgtgattaaagagtgtcactcattatcatcaatgccttttaaaattggggggt |
200 |
Q |
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| T |
16842966 |
tatagtcttcccaacaaattgacacagctccaagatctcagacatcttgtgattaaagagtgtcactcattatcatcaatgccttttaaaattggggggt |
16842867 |
T |
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| Q |
201 |
taactcatctgagaacattgagcattttca |
230 |
Q |
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| T |
16842866 |
taactcatctgagaacattgagcattttca |
16842837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 18874201 - 18874253
Alignment:
| Q |
105 |
gtcttcccaacaaattgacacagcttcaagatctcagacatcttgtgattaaa |
157 |
Q |
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| T |
18874201 |
gtcttcccaaaaaattgacacagcttcaagatctcaggcatcttgtgattaaa |
18874253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 18807204 - 18807256
Alignment:
| Q |
105 |
gtcttcccaacaaattgacacagcttcaagatctcagacatcttgtgattaaa |
157 |
Q |
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| T |
18807204 |
gtcttcccaaaaaattgacacagcttcaagacctcaggcatcttgtgattaaa |
18807256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 8503 - 8449
Alignment:
| Q |
105 |
gtcttcccaacaaattgacacagcttcaagatctcagacatcttgtgattaaaga |
159 |
Q |
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| T |
8503 |
gtcttcccaaaaaattgacacaacttcaagatctcaggcatcttgtgattaaaga |
8449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 3821 - 3742
Alignment:
| Q |
106 |
tcttcccaacaaattgacacagcttcaagatctcagacatcttgtgattaaagagtgtcactcattatcatcaatgcctt |
185 |
Q |
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||||||| | ||||||||||| |||||||| ||||| ||||| ||||||||||| || | ||||||| |||||||||| |
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| T |
3821 |
tcttcccgaaaaattgacacaacttcaagacctcaggcatctcgtgattaaagattgcaattcattatattcaatgcctt |
3742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 11934 - 11886
Alignment:
| Q |
182 |
ccttttaaaattggggggttaactcatctgagaacattgagcattttca |
230 |
Q |
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|||||||||||||||| ||||||| ||||| |||||||| |||||||| |
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| T |
11934 |
ccttttaaaattggggagttaacttgtctgaaaacattgaccattttca |
11886 |
T |
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