View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12546_low_15 (Length: 227)
Name: NF12546_low_15
Description: NF12546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12546_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 27105602 - 27105795
Alignment:
| Q |
20 |
cactttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaa |
119 |
Q |
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| T |
27105602 |
cactttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaa |
27105701 |
T |
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| Q |
120 |
aggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctctctctttcccacacaggt |
213 |
Q |
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| T |
27105702 |
aggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctctctctttcccacacaggt |
27105795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 27098603 - 27098796
Alignment:
| Q |
20 |
cactttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaa |
119 |
Q |
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| T |
27098603 |
cactttccttcatcaagctcaacttaagccttgttatcatttcaccatcaatattaaaacaatattgcttcataactgtagtgttgtgttgattcagaaa |
27098702 |
T |
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| Q |
120 |
aggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctctctctttcccacacaggt |
213 |
Q |
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| T |
27098703 |
aggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgttcagttattgatccaataagtctctctctttcccacacaggt |
27098796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 27062811 - 27063002
Alignment:
| Q |
23 |
tttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaaagg |
122 |
Q |
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| T |
27062811 |
tttcgttcatcaaactcaacttaagtcttgttatcgtttcgccctctactttaaaacaatattgcttaataattttagtattaggttgattcacaaaggg |
27062910 |
T |
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| Q |
123 |
tgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctctctctttcccacacaggtt |
214 |
Q |
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| T |
27062911 |
tgaaaatgcaacagattctctgtccatggggcattgtggaaatggttgtgtagttattgttccaacttggttttctctttcccacacaggtt |
27063002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 28 - 214
Target Start/End: Original strand, 27069889 - 27070075
Alignment:
| Q |
28 |
ttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaaaggtgaaa |
127 |
Q |
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| T |
27069889 |
ttcatcaaactcaacttaagtcttgttatcgtttcgccctctactttaaaagaatattgcttaataattgtagtattagtttgattcacaaagggtgaaa |
27069988 |
T |
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| Q |
128 |
atgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctctctctttcccacacaggtt |
214 |
Q |
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| T |
27069989 |
atgcaacagattttctgtccatgggacattgtggaaaaggttgtatagctattgatccaacttgtgtttctctttcccacacaggtt |
27070075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 27085940 - 27086131
Alignment:
| Q |
23 |
tttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaaagg |
122 |
Q |
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| T |
27085940 |
tttcattcatcaaactcaacttaagtcttcttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtattattttgatttacaaaggg |
27086039 |
T |
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| Q |
123 |
tgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctctctctttcccacacaggtt |
214 |
Q |
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| T |
27086040 |
tgaaagtgaaacagattctcggtccatgggacattgtggaaaagtttgtatagctattgatccaacttgtttttctctttcccacacaggtt |
27086131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 214
Target Start/End: Original strand, 27041467 - 27041653
Alignment:
| Q |
28 |
ttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaaaggtgaaa |
127 |
Q |
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| T |
27041467 |
ttcatcaaactcaatttaagtcctgttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtattattttgatttacaaagggtgaaa |
27041566 |
T |
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| Q |
128 |
atgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctctctctttcccacacaggtt |
214 |
Q |
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| T |
27041567 |
gtgaaacagattctcggtccatgggacattgtggaaaaggttttatagctattgatcgaacttgtttttctctttcccacacaggtt |
27041653 |
T |
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