View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12546_low_17 (Length: 207)
Name: NF12546_low_17
Description: NF12546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12546_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 2919124 - 2919246
Alignment:
| Q |
1 |
aatacaatatgtcctctttaacactggacatcaaaggcaacccttcaatgctctataacaaagttccagtta--------tgccagaaaatagaatataa |
92 |
Q |
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| T |
2919124 |
aataccatatgtcctctttaacactggacatcaaaggcaacccttcaatgctctataacaaagttccagttaattatgctagctagaaaatagaatataa |
2919223 |
T |
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| Q |
93 |
gtagtagaatatttttctcatca |
115 |
Q |
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||||||||||||||||||||||| |
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| T |
2919224 |
gtagtagaatatttttctcatca |
2919246 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 31412906 - 31412944
Alignment:
| Q |
139 |
tcgtagaaacaaaatgaaaatgggtttggagatggagaa |
177 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |
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| T |
31412906 |
tcgtagaagcaaaatgaaaatgggtttggagatggagaa |
31412944 |
T |
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