View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12546_low_5 (Length: 401)
Name: NF12546_low_5
Description: NF12546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12546_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 2361326 - 2360956
Alignment:
| Q |
1 |
gcggcggagataagagacccggcgcgtggagtgcgtgtgtggcttggtacatttcaaacggctgaagaagctgctattgtgtacgacaacgcggctatta |
100 |
Q |
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| T |
2361326 |
gcggcggagataagagacccggcgcgtggagtgcgtgtgtggcttggtacatttcaaacggctgaagaagctgctattgtgtacgacaacgcggctatta |
2361227 |
T |
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| Q |
101 |
agttgcgtggaccagacgcgctaactaatttcataactccacctgtaagtgcagctgccacgtgtcagttatcatcaccaccaccggaaaatgaaattcc |
200 |
Q |
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| T |
2361226 |
agttgcgtggaccagacgcgctaactaatttcataactccacctgtaagtgcagctgccacgtgtcagttatcatcaccaccaccggaaaatgaaattcc |
2361127 |
T |
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| Q |
201 |
tcttccgtcattaccgttaccagcaaactccggtgaagaatctcaatctcaatcacaatctcaaaacaataataataagagtttattttctcctacttca |
300 |
Q |
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| T |
2361126 |
tctttcgtcattaccgttaccggcaaactccggtgaagaatctcaatc------------tcaaaacaataataataagagtttattttctcctacttca |
2361039 |
T |
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| Q |
301 |
gttcttcaatgttgttcatcttctgaagaagtagctgaatctgaatcaatgttttcaattccaagtgatatacagtttgattt |
383 |
Q |
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| T |
2361038 |
gttcttcaatgttgttcatcttctgaagaagtagctgaatctgaatcaatgttttcaattccaagtgatatacagtttgattt |
2360956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 41197538 - 41197611
Alignment:
| Q |
46 |
ggtacatttcaaacggctgaagaagctgctattgtgtacgacaacgcggctattaagttgcgtggaccagacgc |
119 |
Q |
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| T |
41197538 |
ggtacttttgaaactgcagaagaagctgctatggtttatgacaatgccgctattaagcttcgtggaccagacgc |
41197611 |
T |
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