View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12546_low_6 (Length: 392)
Name: NF12546_low_6
Description: NF12546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12546_low_6 |
 | |
|
| [»] scaffold0182 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 374
Target Start/End: Complemental strand, 267514 - 267148
Alignment:
| Q |
15 |
gatgtagcagcaggtgcgggcagttccagcactggacagtctcgctggcagccaccgtcgcgaggtagagtgaagtgtaatatagatgcagccttctccg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
267514 |
gatgtagcagcaggtgcgggcagttccagcactagacagtctcgctggcagccaccgtcgcgaggtagagtgaagtgtaatatagatgcaaccttctgag |
267415 |
T |
|
| Q |
115 |
atcaattcaacaagacgggcattggtatatgcatccgagatgaggagggtacttttattttggctcaatcaatccctatttccccaa-------agtggt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
267414 |
atcaattcaacaagacgggcattggtatatgcatccgagatgaggagggtacttttattttggctcaatcaatccctatttccccaaagtgtccagtggt |
267315 |
T |
|
| Q |
208 |
aatgggagaagtgttggctttgtataaagcaatagaatggttaagtgacatggcctttgattcggtggatttttgtttagactccaaaactattacggat |
307 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
267314 |
aatgggagaagctttggctttgtataaagcaatagaatggttaagtgacatggcgtttgattcggtggatttttgttatgactccaaaactattacagat |
267215 |
T |
|
| Q |
308 |
gcttttaatcagaattgggtagatgtcacggagactggttatattttattggaatgccgacgattgt |
374 |
Q |
| |
|
||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
267214 |
gcttttaatcagacctgggtagatgtctcagagactggttatattttattggaatgccgacgattgt |
267148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 374
Target Start/End: Complemental strand, 14132257 - 14131893
Alignment:
| Q |
15 |
gatgtagcagcaggtgcgggcagttccagcactggacagtctcgctggcagccaccgtcgcgaggtagagtgaagtgtaatatagatgcagccttctccg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14132257 |
gatgtagcagcaggtgcgggcagttccagcactgc-cagtctcgctggcatccaccgtcgcgaggtagagtgaagtgtaatatagatgcagccttctcca |
14132159 |
T |
|
| Q |
115 |
atcaattcaacaagacgggcattggtatatgcatccgagatgaggagggtacttttattttggctcaatcaatccctatttccccaa-------agtggt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14132158 |
atcaattcaacaagacgggcattggtatatgcatccgagatgaggagggcacatttattttggctcaatcaatccctatttccccaaggtgtccagtggt |
14132059 |
T |
|
| Q |
208 |
aatgggagaagtgttggctttgtataaagcaatagaatggttaagtgacatggcctttgattcggtggatttttgtttagactccaaaactattacggat |
307 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14132058 |
aatgggagaagcattggctttgtataaagcaatagaatggttaagtgacatggcctttgattcggtggatttttgttctgactccaaaactattacggat |
14131959 |
T |
|
| Q |
308 |
gcttttaatcagaattgggtagatgtcacggagactggttatattttattggaatgccgacgattgt |
374 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
14131958 |
gcttttaatcagaact-ggtagatgtcacggagactggttatattttattggaatacctacgattgt |
14131893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 234 - 374
Target Start/End: Complemental strand, 27918657 - 27918518
Alignment:
| Q |
234 |
aagcaatagaatggttaagtgacatggcctttgattcggtggatttttgtttagactccaaaactattacggatgcttttaatcagaattgggtagatgt |
333 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||| |||||||||||| ||||||||| | |||| |||||||||| ||||||| ||||| ||| |
|
|
| T |
27918657 |
aagcaatagaatggttaagcgacatgtcctttgattcgatggatttttgttctgactccaaacccattatagatgctttta-tcagaatcaggtaggtgt |
27918559 |
T |
|
| Q |
334 |
cacggagactggttatattttattggaatgccgacgattgt |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27918558 |
cacggagactggttatattttattggaatgccgacgattgt |
27918518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 12195 - 12149
Alignment:
| Q |
15 |
gatgtagcagcaggtgcgggcagttccagcactggacagtctcgctg |
61 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12195 |
gatgtagcagcaggtgtgggcagttccagcactggacagtctcgctg |
12149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University