View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12546_low_8 (Length: 300)
Name: NF12546_low_8
Description: NF12546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12546_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 39 - 285
Target Start/End: Complemental strand, 39833302 - 39833054
Alignment:
| Q |
39 |
agcagagagatagaaagtgaaaatggacctcaaaattcca-caaaatgcattccatggttcgtatgatatattccaagctagaaaagctaccaagtaact |
137 |
Q |
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| T |
39833302 |
agcagagagatagaaagtgaaaatggacctcaaaattccatcaaaatgcattccatggttcgtatgatatattccaagctagaaaagctaccaagtaact |
39833203 |
T |
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| Q |
138 |
aagggtaataaagcactgtggcatccattacactaaaaattgt-nnnnnnnctgaataagaaaccaagtttgtaaagaagtttatgagatatcaatgacc |
236 |
Q |
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| T |
39833202 |
aagggtaataaagcactgtggcatccattacactaaaaattgtaaaaaaaactgaaaatgaaaccaagtttgtaaagaagtttatgagatattaatgacc |
39833103 |
T |
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| Q |
237 |
tgaaattcagaaagctttccttcatccaacaatttgaaaagggcaaaac |
285 |
Q |
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| T |
39833102 |
tgaaattcagaaagctttccttcatccaacaatttgaaaagggcaaaac |
39833054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 2709255 - 2709323
Alignment:
| Q |
217 |
tttatgagatatcaatgacctgaaattcagaaagctttccttcatccaacaatttgaaaagggcaaaac |
285 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2709255 |
tttatgagatattaatgacctgaaattgagaaagctttccttcatccaacaatttgaaaagggcaaaac |
2709323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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