View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12546_low_9 (Length: 286)
Name: NF12546_low_9
Description: NF12546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12546_low_9 |
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| [»] chr4 (6 HSPs) |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 286
Target Start/End: Complemental strand, 11702118 - 11701849
Alignment:
| Q |
17 |
actattaactatggcgtaaaaattcaagacgtttgagagaagtagttcattttagacaaaaaataaaataggtagaagtgacgaacagaactgaccaaga |
116 |
Q |
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| T |
11702118 |
actattaactatggcgtaaaaattcaagacgtttgagagaagtagttcattttagacaaaaaataaaataggtagaagtgacgaacagaactgaccaaga |
11702019 |
T |
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| Q |
117 |
tatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaagctgttccagccca |
216 |
Q |
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| T |
11702018 |
tatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaagctgttccagccca |
11701919 |
T |
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| Q |
217 |
aacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattc |
286 |
Q |
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| T |
11701918 |
aacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattc |
11701849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 92 - 282
Target Start/End: Complemental strand, 11779225 - 11779035
Alignment:
| Q |
92 |
aagtgacgaacagaactgaccaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagag |
191 |
Q |
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|||||| ||||||||| ||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| ||||||| |
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| T |
11779225 |
aagtgaagaacagaaccaaccaatacatagataagagaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaatgaatgcaccaaagagag |
11779126 |
T |
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| Q |
192 |
gaagtagagaagctgttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaa |
282 |
Q |
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| T |
11779125 |
gaaggagagaagcagttccagcccaaacattcacattcttagcagcagttgcagtgctttgtttgagtggccctgttagatatgatatcaa |
11779035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 106 - 282
Target Start/End: Complemental strand, 11676136 - 11675960
Alignment:
| Q |
106 |
actgaccaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaagct |
205 |
Q |
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| T |
11676136 |
actgaccaagatataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagca |
11676037 |
T |
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| Q |
206 |
gttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaa |
282 |
Q |
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| T |
11676036 |
actccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaa |
11675960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 106 - 282
Target Start/End: Complemental strand, 11684415 - 11684239
Alignment:
| Q |
106 |
actgaccaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaagct |
205 |
Q |
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||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
11684415 |
actgaccaagatataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagca |
11684316 |
T |
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| Q |
206 |
gttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaa |
282 |
Q |
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| T |
11684315 |
actccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaa |
11684239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 116 - 286
Target Start/End: Complemental strand, 11798063 - 11797893
Alignment:
| Q |
116 |
atatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaagctgttccagccc |
215 |
Q |
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| T |
11798063 |
atatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccaaccc |
11797964 |
T |
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| Q |
216 |
aaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattc |
286 |
Q |
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| T |
11797963 |
aaacattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattc |
11797893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 110 - 286
Target Start/End: Complemental strand, 11696228 - 11696052
Alignment:
| Q |
110 |
accaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaagctgttc |
209 |
Q |
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||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |
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| T |
11696228 |
accaatatatagatgagagaagcaagcatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttc |
11696129 |
T |
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| Q |
210 |
cagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattc |
286 |
Q |
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| T |
11696128 |
cagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattc |
11696052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 92 - 282
Target Start/End: Complemental strand, 16688 - 16498
Alignment:
| Q |
92 |
aagtgacgaacagaactgaccaagatatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagag |
191 |
Q |
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|||||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16688 |
aagtgaagaacagaaccaaccaatatatagataagagaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaacgaaagcacctaagagag |
16589 |
T |
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| Q |
192 |
gaagtagagaagctgttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaa |
282 |
Q |
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||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
16588 |
gaagtagagaagcagttccagcccaaatattcacattcttagcagctgttgcagtgctttgtttgagtggtcctgttagatatgatatcaa |
16498 |
T |
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