View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12547_high_1 (Length: 692)
Name: NF12547_high_1
Description: NF12547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12547_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 46 - 682
Target Start/End: Original strand, 49690434 - 49691059
Alignment:
| Q |
46 |
acttgtgtggtactcattttccaagtcaaccagcgtgtcaattggatttaaaggatatatttatatttatgcaatgaaattaacaagtgtggaacaaatt |
145 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||| | || |||| |||||||||| | ||||| ||||| |||||||||||||||| |
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| T |
49690434 |
acttgtgtggtactcattttccaagtcaactagcgtgtcaatttgcttcaaagaatatatttatgtcg-tgcaa----attaa-aagtgtggaacaaatt |
49690527 |
T |
|
| Q |
146 |
gtttaacacacacagttgaatggctttagtttatgttttacattttaggttccttttgttctctcatttaattgtgttactgctacttgtcttaactagg |
245 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
49690528 |
gtttaacacaa----ttgaatggctttagtttatgttttacattttaggttccttttgttctctcatttgactgtgttactgctacttgtcttaactagg |
49690623 |
T |
|
| Q |
246 |
aaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaagtcttgggtttcttaaatacccttttacaacagttgaattcccaagctgtg |
345 |
Q |
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||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
49690624 |
aaaggaaatggacacagtggtgattgtccagactcatttggttgtggaaatcttgggttttttaaatacccttttacaacagttgaattcccaagctgtg |
49690723 |
T |
|
| Q |
346 |
gtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagttaatcaaaagtggaaaactcttccaagttaaaaagattga |
445 |
Q |
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| T |
49690724 |
gtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagttaaccaaaagaggaaaactcttccaagttaaaaagattga |
49690823 |
T |
|
| Q |
446 |
taatcactggtccattggcaaccctatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgaggcattcagccatgttaatatt |
545 |
Q |
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| T |
49690824 |
taatcactggtccattggcaacactatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgaggcattcagctatgttaatatt |
49690923 |
T |
|
| Q |
546 |
acactccctccttcctctccttttggaacnnnnnnnnatgaaaaactacataacagctttcaaatgcaaccatacccgaaaattaggcatccaacctcca |
645 |
Q |
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| T |
49690924 |
accctccctcctcccactccttttggaac-tttttttatgaaaaactacataacagctttcaaatgcaaccatacccgaaaattaggcattcaccctcca |
49691022 |
T |
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| Q |
646 |
agtaatttcttcagaaatagttcttgtcatccctatg |
682 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| |
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| T |
49691023 |
agtaatttcttcataaatagttcttgtcatccctatg |
49691059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 198 - 682
Target Start/End: Original strand, 49678949 - 49679425
Alignment:
| Q |
198 |
cttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaagtc |
297 |
Q |
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| T |
49678949 |
cttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaa--- |
49679045 |
T |
|
| Q |
298 |
ttgggtttcttaaatacccttttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagta |
397 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
49679046 |
-----ttgattaaatacccttttacaacagttgaattcccaagctgtggtacattggcaattcaaggttgtgataatctcaacaaaactgctatgaagca |
49679140 |
T |
|
| Q |
398 |
tgtccagttaatcaaaagtggaaaactcttccaagttaaaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcacc |
497 |
Q |
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| T |
49679141 |
cgtccagttaaccaaaggaggaaaactctttcaagttacaaacattgataatcgcgggtccattggcaacactatttccattattgaccccaatatcacc |
49679240 |
T |
|
| Q |
498 |
aagcttttggagaaaaatgcttgtgaggcattcagccatgttaatattacactccctccttcctctccttttggaacnnnnnnnnatgaaaaactacata |
597 |
Q |
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| T |
49679241 |
aagcttttggagaagaatgcttgtgaggcattcagccatgttaatattacactccttccttcctctccttttggaacttttttttatgaaaaactacata |
49679340 |
T |
|
| Q |
598 |
acagctttcaaatgcaaccatacccgaaaattaggcatccaacctccaagtaatttcttcagaaatagttcttgtcatccctatg |
682 |
Q |
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| T |
49679341 |
acagctttcaaatgcaaccgtacccgaaaattaggcatccaacctccaagtaatttcttcagaaatagttcttgtcatccctatg |
49679425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 198 - 666
Target Start/End: Original strand, 49686316 - 49686774
Alignment:
| Q |
198 |
cttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaagtc |
297 |
Q |
| |
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||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
49686316 |
cttttgttctctcatttgactgtgttactgctacttgtcttaactagtaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaaatc |
49686415 |
T |
|
| Q |
298 |
ttgggtttcttaaatacccttttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagta |
397 |
Q |
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|||| || || ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||| | |
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| T |
49686416 |
ttggattggttggctacccttttaccacagttgaattcccaaactgtggtgcattggcaattcaaggttgtgacgatctcaacaaaactgctacgaaaca |
49686515 |
T |
|
| Q |
398 |
tgtccagttaatcaaaagtggaaaactcttccaagttaaaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcacc |
497 |
Q |
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| T |
49686516 |
cgtccagtttaccaaaggaggaaaacactttcaagttacaaacattaaaaatgagcggcc------caacactatttccattgttgatctgaatttcacc |
49686609 |
T |
|
| Q |
498 |
aagcttttggagaaaaatgcttgtgaggcattcagccatgttaatattacactccctccttcctctccttttggaacnnnnnnnnatgaaaaactacata |
597 |
Q |
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| T |
49686610 |
aagcttttgcagaaaaatgcttgcgaggcctttagctatg---atatcactctccctcctccctctccttttggaac-tttttatatgaaagacaacata |
49686705 |
T |
|
| Q |
598 |
acagctttcaaatgcaaccatacccgaaaattaggcatccaacctccaagtaatttcttcagaaatagt |
666 |
Q |
| |
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|||||||||||||||| |||||||| |||||||| || | | || |||| ||||||||||| ||||||| |
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| T |
49686706 |
acagctttcaaatgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaatagt |
49686774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 49678768 - 49678820
Alignment:
| Q |
38 |
ctcataatacttgtgtggtactcattttccaagtcaaccagcgtgtcaattgg |
90 |
Q |
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||||||| |||||||||||||||||||| ||||||||| | |||||||||||| |
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| T |
49678768 |
ctcataagacttgtgtggtactcattttacaagtcaactaacgtgtcaattgg |
49678820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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