View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12547_high_2 (Length: 401)
Name: NF12547_high_2
Description: NF12547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12547_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 47570087 - 47570396
Alignment:
| Q |
19 |
catacgttgctgagtcttggtaagaaatttgagcatgctaatcttcttatcggaatcggataattcggtggacctgcatttatcaacaagttctttaagc |
118 |
Q |
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| T |
47570087 |
catacgttgctgagtcttggtaagaaatttgagcatgctaatcttcttatcggaatcggataattcggtggacctgcatttatcaacaagctctttaagc |
47570186 |
T |
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| Q |
119 |
gaattgtatgaatcttgagcggcacgagtaacgagggtggataactccaccgtctgttgccctaactccgccgtagccattgatttcgattgttcaattc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47570187 |
gaattgtatgaatcttgagcggcacgagtaacgagggtggataactccaccgtctgttgccctaactccgccgtagccattgatttcgattgttcaattc |
47570286 |
T |
|
| Q |
219 |
tagggttcttcttgatctgttaatgcatcgaaatcaaattagggttttaggtcaaaacgacaacggttaatttttgaaccgttgtcaattaggagcaaag |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47570287 |
tagggttcttcttgatctgttaatgcatcgaaatcaaattagggttttaggtcaaaaagacaacggttaatttttgaaccgttgtcaattaggagcaaag |
47570386 |
T |
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| Q |
319 |
gaaagacgaa |
328 |
Q |
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|||||||||| |
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| T |
47570387 |
gaaagacgaa |
47570396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 38977460 - 38977648
Alignment:
| Q |
19 |
catacgttgctgagtcttggtaagaaatttgagcatgctaatcttcttatcggaatcggataattcggtggacc---tgcatttatcaacaagttcttta |
115 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||| |||||| |||||| |
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| T |
38977460 |
catacgttgccgagtcttggtgagaaatttgagcatgctaatcttcttatcggtatcggataattcggtggagcagctgcatttatgaacaaggtcttta |
38977559 |
T |
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| Q |
116 |
agcgaattgtatgaatcttgagcggcacgagtaacgagggtggataactccaccgtctgttgccctaactccgccgtagccattgattt |
204 |
Q |
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|| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38977560 |
agtgaattgtatgaatcctgagcagcacgagtaacgagggtggataactccaccgtctgttggcctaactccgccgtagccattgattt |
38977648 |
T |
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