View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12547_low_2 (Length: 438)

Name: NF12547_low_2
Description: NF12547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12547_low_2
NF12547_low_2
[»] chr7 (3 HSPs)
chr7 (5-438)||(14744595-14745028)
chr7 (176-265)||(29099228-29099318)
chr7 (177-254)||(41808764-41808841)
[»] chr5 (2 HSPs)
chr5 (5-438)||(17582308-17582741)
chr5 (168-269)||(34515480-34515580)
[»] chr3 (3 HSPs)
chr3 (146-332)||(51766548-51766732)
chr3 (163-255)||(50731448-50731540)
chr3 (163-255)||(50781314-50781406)
[»] chr1 (2 HSPs)
chr1 (141-271)||(46173614-46173746)
chr1 (206-255)||(47476372-47476421)
[»] chr2 (3 HSPs)
chr2 (176-273)||(36148779-36148876)
chr2 (165-253)||(36264775-36264863)
chr2 (206-253)||(40877754-40877801)
[»] chr8 (2 HSPs)
chr8 (196-296)||(10675054-10675154)
chr8 (176-246)||(12145892-12145962)
[»] chr6 (1 HSPs)
chr6 (143-231)||(7076407-7076494)
[»] chr4 (4 HSPs)
chr4 (164-255)||(26141926-26142017)
chr4 (209-271)||(44278756-44278818)
chr4 (177-255)||(32573463-32573539)
chr4 (163-255)||(26001843-26001934)


Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 5 - 438
Target Start/End: Complemental strand, 14745028 - 14744595
Alignment:
Q  5 tgtataatgttacaaatgatattcgagcacagggatatcaatcatgagaagaataatgaacaaagcgccactgatcccaacgataatagagaaacattaa 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  14745028 tgtataatgttacaaatgatattcgagcacagggatatcaatcatgagaagaataatgaacaaagcgccactgatcccaacggtaatatagaaacattaa 14744929  T
Q  105 aagtggtcgcccaatttatcactgaagccgaacttgttcagaggcggacctaggtggcgacatgggaggaccatggcctccccaaagtctcaaaaacttc 204  Q
    ||||||||||||||| |||||||||||  |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14744928 aagtggtcgcccaatctatcactgaagttgaacttgttcggaggcggacctaggtggagacatgggaggaccatggcctccccaaagtctcaaaaacttc 14744829  T
Q  205 ttttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttacattatacgtcactcgtttacactccagcacagtggta 304  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  14744828 atttttaacaggtatataaacatatttttacctaaatgttatgttatatattgtaacgtttacgttatacgtcacttgtttacactccagcacagtggta 14744729  T
Q  305 atgcatctcgcctttgagctttaggttgcttatttgatccttgattcgtccatttttatcctttcactagtgttttttgcatttttaaacaaaagatgcg 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14744728 atgcatctcgcctttgagctttaggttgcttatttgatccttgattcgtccatttttatcctttcactagtgttttttgcatttttaaacaaaagatgcg 14744629  T
Q  405 atgaaaatattgcacaatgcaagtattgaaccat 438  Q
    ||||||||||||||||||||||||||||||||||    
T  14744628 atgaaaatattgcacaatgcaagtattgaaccat 14744595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 265
Target Start/End: Original strand, 29099228 - 29099318
Alignment:
Q  176 catggcctccccaaagtctcaaaaacttct-tttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgttt 265  Q
    ||||||||||||||||| | ||||| |||  ||||||| ||||||||| ||||||||||| ||||||||||||||||||||  ||||||||    
T  29099228 catggcctccccaaagtttaaaaaaattccatttttaataggtatatagacacatttttaactaaatgttatgttatatatattaacgttt 29099318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 41808764 - 41808841
Alignment:
Q  177 atggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatata 254  Q
    ||||||||| ||||||||||||   ||| ||||||| |||||| || | ||||||||||||||| ||||| |||||||    
T  41808764 atggcctcctcaaagtctcaaagttttcatttttaataggtatgtatatacatttttacctaaaagttatattatata 41808841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 5 - 438
Target Start/End: Original strand, 17582308 - 17582741
Alignment:
Q  5 tgtataatgttacaaatgatattcgagcacagggatatcaatcatgagaagaataatgaacaaagcgccactgatcccaacgataatagagaaacattaa 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||    
T  17582308 tgtataatgttacaaatgatattcgagcacagggatatcaatcatgagaagaataatgaacaaagcgccactgatcccaacagtaatatagaaacattaa 17582407  T
Q  105 aagtggtcgcccaatttatcactgaagccgaacttgttcagaggcggacctaggtggcgacatgggaggaccatggcctccccaaagtctcaaaaacttc 204  Q
    ||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17582408 aagtggtcgcccaatctatcactaaagccgaacttgttcagaggtggacctaggtggagacatgggaggaccatggcctccccaaagtctcaaaaacttc 17582507  T
Q  205 ttttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttacattatacgtcactcgtttacactccagcacagtggta 304  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17582508 atttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttacattatacatcactcgtttacactccagcacagtggta 17582607  T
Q  305 atgcatctcgcctttgagctttaggttgcttatttgatccttgattcgtccatttttatcctttcactagtgttttttgcatttttaaacaaaagatgcg 404  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17582608 atgcatctcgcctttgagctttaggttgcttctttgatccttgattcgtccacttttatcctttcactagtgttttttgcatttttaaacaaaagatgcg 17582707  T
Q  405 atgaaaatattgcacaatgcaagtattgaaccat 438  Q
    ||||||||||||||||||||||||||||||||||    
T  17582708 atgaaaatattgcacaatgcaagtattgaaccat 17582741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 168 - 269
Target Start/End: Complemental strand, 34515580 - 34515480
Alignment:
Q  168 gggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttac 267  Q
    |||||| ||| |||||||||||||||||||||| ||| ||||||  || |||||||||||| ||||| |||| |||||| ||||||||  ||||||||||    
T  34515580 gggagggccagggcctccccaaagtctcaaaaatttcatttttagtagatatataaacaca-ttttatctaattgttatattatatatactaacgtttac 34515482  T
Q  268 at 269  Q
    ||    
T  34515481 at 34515480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 146 - 332
Target Start/End: Complemental strand, 51766732 - 51766548
Alignment:
Q  146 aggcggacctaggtggcgacatgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgtta 245  Q
    ||||||| |||||||| || | |||| |  ||||||||||||||||||||||||| ||| ||||||| |||||||  |||||||||||| ||||||||||    
T  51766732 aggcggagctaggtggggaaaggggatggtcatggcctccccaaagtctcaaaaatttcatttttaataggtata--aacacatttttagctaaatgtta 51766635  T
Q  246 tgttatatattgtaacgtttacattatacgtcactcgtttacactccagcacagtggtaatgcatctcgcctttgagctttaggttg 332  Q
    | |||||||| |||| |||||||| ||| ||||  | |||||| ||||||||||  ||||| ||||||||||||||||||| |||||    
T  51766634 tattatatatagtaatgtttacatcataagtcatacatttacagtccagcacagcagtaatccatctcgcctttgagcttttggttg 51766548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 255
Target Start/End: Complemental strand, 50731540 - 50731448
Alignment:
Q  163 gacatgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatat 255  Q
    ||||||||||| ||||| |||||| | |||||||||   ||  ||||||| |||||| || | ||||||||||||||| ||||| ||||||||    
T  50731540 gacatgggagggccatgacctcccgagagtctcaaagtttttatttttaataggtatgtatatacatttttacctaaaagttatattatatat 50731448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 255
Target Start/End: Original strand, 50781314 - 50781406
Alignment:
Q  163 gacatgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatat 255  Q
    ||||||||||| ||||| |||||| | |||||||||   ||  ||||||| |||||| || | ||||||||||||||| ||||| ||||||||    
T  50781314 gacatgggagggccatgacctcccgagagtctcaaagtttttatttttaataggtatgtatatacatttttacctaaaagttatattatatat 50781406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 141 - 271
Target Start/End: Complemental strand, 46173746 - 46173614
Alignment:
Q  141 ttcagaggcggacctaggtggcgacatgggaggaccatggcctccccaaagtctc-aaaaacttcttttttaacagg--tatataaacacatttttacct 237  Q
    |||||||||||| |||||||| |||  |||| ||||||||| |||||||| |||| |||||  || ||||||| |||  |||||||||||| ||||||||    
T  46173746 ttcagaggcggatctaggtggggactggggatgaccatggcgtccccaaaatctcaaaaaaaatcatttttaataggtatatataaacaca-ttttacct 46173648  T
Q  238 aaatgttatgttatatattgtaacgtttacatta 271  Q
    |||| |||| |||||||| || ||| ||||||||    
T  46173647 aaatattatattatatatagtgacgcttacatta 46173614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 47476421 - 47476372
Alignment:
Q  206 tttttaacaggtatataaacacatttttacctaaatgttatgttatatat 255  Q
    ||||||| ||||||||| ||||||||||| |||||| ||||||| |||||    
T  47476421 tttttaataggtatatatacacatttttaactaaatattatgttgtatat 47476372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 273
Target Start/End: Complemental strand, 36148876 - 36148779
Alignment:
Q  176 catggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttacattata 273  Q
    ||||||||||||||||| | |||||   | ||||||| ||||||||| ||||| |||||  |||||||||||||||||||  |||||||| |||||||    
T  36148876 catggcctccccaaagtttaaaaaaaaacatttttaataggtatatatacacagttttaattaaatgttatgttatatatattaacgtttgcattata 36148779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 253
Target Start/End: Complemental strand, 36264863 - 36264775
Alignment:
Q  165 catgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatat 253  Q
    |||||||||  ||||||||||||||||| || |||| ||  ||||||| |||||||||   ||||||||| ||||||||||||||||||    
T  36264863 catgggagggtcatggcctccccaaagtatccaaaattttatttttaataggtatatattaacatttttagctaaatgttatgttatat 36264775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 40877754 - 40877801
Alignment:
Q  206 tttttaacaggtatataaacacatttttacctaaatgttatgttatat 253  Q
    ||||||| || |||||| ||||||||||| ||||||||||||||||||    
T  40877754 tttttaatagttatatatacacatttttagctaaatgttatgttatat 40877801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 296
Target Start/End: Complemental strand, 10675154 - 10675054
Alignment:
Q  196 aaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttacattatacgtcactcgtttacactccagc 295  Q
    ||||| ||| ||||||| |||| || | ||||||||||| ||||||||||||||||||||  |||||||| ||||||| |||||   ||||||||| |||    
T  10675154 aaaaaattcatttttaataggtgtaaatacacatttttaactaaatgttatgttatatatattaacgtttgcattataagtcacgtctttacactctagc 10675055  T
Q  296 a 296  Q
    |    
T  10675054 a 10675054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 12145892 - 12145962
Alignment:
Q  176 catggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttat 246  Q
    |||||| |||||||||| | ||||| ||| ||||||| ||||||||| |||||||||||  ||||||||||    
T  12145892 catggcatccccaaagttttaaaaaattcatttttaataggtatatatacacatttttaattaaatgttat 12145962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 231
Target Start/End: Complemental strand, 7076494 - 7076407
Alignment:
Q  143 cagaggcggacctaggtggcgacatgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacattt 231  Q
    |||||||||| |||||||| |||  || |||  ||||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||||    
T  7076494 cagaggcggagctaggtgg-gactgggaagggacatggcctccccaaagtctcaaaaatttcatttttaacatgtacataaacacattt 7076407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 255
Target Start/End: Original strand, 26141926 - 26142017
Alignment:
Q  164 acatgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatat 255  Q
    |||||||||| |||||||||||| ||||||||||| | |||  |||||| |||||||||   |||||||||  || ||||||||||||||||    
T  26141926 acatgggagggccatggcctcccgaaagtctcaaacatttcaattttaataggtatatactgacatttttagttatatgttatgttatatat 26142017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 44278818 - 44278756
Alignment:
Q  209 ttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttacatta 271  Q
    |||| ||||||||||| ||||||||| ||||||||||| ||||||||  |||||||| |||||    
T  44278818 ttaataggtatataaatacatttttaactaaatgttatattatatatattaacgtttgcatta 44278756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 32573463 - 32573539
Alignment:
Q  177 atggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatat 255  Q
    |||||||||| ||||||||||||| ||| ||||||| |  ||||||   ||||||| | ||||||||||||||||||||    
T  32573463 atggcctccctaaagtctcaaaaatttcatttttaata--tatatatcgacattttgagctaaatgttatgttatatat 32573539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 255
Target Start/End: Original strand, 26001843 - 26001934
Alignment:
Q  163 gacatgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatat 255  Q
    |||||| || |||||| ||  ||||||| ||||||||| ||| | ||||| |||||||||   ||||||| | ||||||||||||||||||||    
T  26001843 gacatgagatgaccatcgctcccccaaaatctcaaaaatttcatatttaataggtatatattgacatttt-agctaaatgttatgttatatat 26001934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University