View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12548_high_1 (Length: 482)
Name: NF12548_high_1
Description: NF12548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12548_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 472
Target Start/End: Original strand, 22661604 - 22662058
Alignment:
| Q |
18 |
aataatggcatacaaaagagttacaccaatatctctctccccagaatccaataatgcattcttcgaaaaccaatcgataagaatccccacactctttagt |
117 |
Q |
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| T |
22661604 |
aataatggcatacaaaagagttataccaatatctccctccccagaatccaataatgcattcttcgaaaaccaatcggtaagaatccccacactctttagt |
22661703 |
T |
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| Q |
118 |
agctcctccgtcattgtgggatccattgtttgtcccatcacaaccaccgacaacaacaatggtaagctgatggggcgaacattagaacaaccatcctcta |
217 |
Q |
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| T |
22661704 |
agctcctccgtcattgtgggatccattgtttgtcccatcacaaccaccgacaacaacaatggtaagctgatggggcgaacattagaacaaccatcctcta |
22661803 |
T |
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| Q |
218 |
gtaggtttattgatctatctccggaacaaatggaggacgttaaggcatcctcctcnnnnnnncccaagggtaggccgataggctctaaaaacaaatcaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22661804 |
gtaggtttattgatctatctccggaacaaatgaaggacgttaaggcatcctcctcaaaaaaacccaagggtaggccgataggctctaaaaacaaatcaaa |
22661903 |
T |
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| Q |
318 |
agaacttgtcgttttaaatgaaaaaagacaaaacttaatggaaccgattctaattaagatcccttatggaaaagatgtggtggagactctcattgactta |
417 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22661904 |
agaacttgtcgttttaaatgaaaaaaaacaaaacctaatggaaccgattctaattaagatcccttatggaaaggatgtggtggagactctcattgacttg |
22662003 |
T |
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| Q |
418 |
gctcggcatcaacaagttggaatcacagtgcgaagtggttctggtcctgtctctg |
472 |
Q |
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| T |
22662004 |
gctcggcatcaacaagttggaatcacagtgcgaagtggttctggtcctgtttctg |
22662058 |
T |
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