View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12548_high_2 (Length: 481)
Name: NF12548_high_2
Description: NF12548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12548_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 346
Target Start/End: Original strand, 55986514 - 55986844
Alignment:
| Q |
16 |
agaaatacttgaatgcttcataattaattacaactagcaaatcaaaacaataaaa-aacacaaactaattgccgtcttgcgacttgcgttgaggcattca |
114 |
Q |
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| T |
55986514 |
agaaatacttga-tgcttcataattaattacaactagcaaatcaaaacaataaaaaaacacaaactaattgccgtcttgcgacttgcgttgaggcattca |
55986612 |
T |
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| Q |
115 |
gtaattccagtgataccagacagaaaatcacatgctctggagcaccatagaatcaacaaacgcaagaaggaataaaaaggtccatccctaatccctaagc |
214 |
Q |
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| T |
55986613 |
gtaattccagtgataccagacagaaaatcacattctctggagcaccatagaatcaacaaacgcaagaaggaataaaaaggtccatctctaatccctaagc |
55986712 |
T |
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| Q |
215 |
aatctcaatttatttatgcataggcatctgtgccattttaaaaacatcgatggaggataacaccactcaaccaacaagatagtatttccctttgtgtgct |
314 |
Q |
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| T |
55986713 |
aatctcaatttatttatgcataggcatctgtgccattgtaaaaacatcgatggaggataacaccactcaaccaacaagatagtatttccctttgtgtgct |
55986812 |
T |
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| Q |
315 |
tcctcacagcattaatacaaacttctacattt |
346 |
Q |
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| T |
55986813 |
tcctcacagcattaatacaaacttctacattt |
55986844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 471
Target Start/End: Original strand, 55986936 - 55986968
Alignment:
| Q |
439 |
cagaccggaagcagaaatgataaggacagtgaa |
471 |
Q |
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| T |
55986936 |
cagaccggaagcagaaatgataaggacagtgaa |
55986968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 33552167 - 33552124
Alignment:
| Q |
28 |
atgcttcataattaattacaactagcaaatcaaaacaataaaaaa |
72 |
Q |
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| T |
33552167 |
atgcttcataattaat-acaactagcaaatcaaaacaataaaaaa |
33552124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 31782281 - 31782213
Alignment:
| Q |
122 |
cagtgataccagacagaaaatcacatgctctggagcaccatagaatcaacaaacgcaagaaggaataaa |
190 |
Q |
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| T |
31782281 |
cagtgatatcaaacacaaaatcgcatgcgctagagcaccatagaatcaacaaacacaagcaagaataaa |
31782213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 31782162 - 31782111
Alignment:
| Q |
295 |
agtatttccctttgtgtgcttcctcacagcattaatacaaacttctacattt |
346 |
Q |
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| T |
31782162 |
agtatttccctttgtgtgcttcatcacagtattaatactcgcttctacattt |
31782111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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