View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12548_high_3 (Length: 412)
Name: NF12548_high_3
Description: NF12548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12548_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 29007754 - 29008150
Alignment:
| Q |
1 |
tcaagtctcgaaaaatacactttacattgttcccacctcttattttgagttttttctctgcttttcccaccattatcacatcatgttttatatcaatatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29007754 |
tcaagtctcgaaaaatacactttacattgttcccacctcttattttgagttttttctctgtttttcccaccattatcacatcatgttttatatcaatata |
29007853 |
T |
|
| Q |
101 |
tttctcatttcgttattttcgtaacctagactctgagaacgaaaactatcatgtaatgcataagagataatagatggaccgacttccttggattcacgag |
200 |
Q |
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| T |
29007854 |
tttctcatttcgttatttttgtaacctagactctgagaacgaaaactatcatgtaatgcataagagataatagatggaccaacttccttggattcacgag |
29007953 |
T |
|
| Q |
201 |
tcccacattcacacatttgaaaaccagtgaccttatggtttatattgaaccgcccaaattcaaattctgtatttggaattatacaatgaaaattgaattt |
300 |
Q |
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| T |
29007954 |
tcccacattcacacatttgaaaaccagtgaccttatggtttatattgaacagcccaaattcaaattctgtatttggaattatacaatgaaaattgaattt |
29008053 |
T |
|
| Q |
301 |
tcattcatttgaacagttccattgaaattttgacggtcactaatgtcttgaatgcacgaatatgtaatctccttattgcaaggaatccgtccaaatt |
397 |
Q |
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| T |
29008054 |
tcattcatttgaacagttcgattgaaattttgacggtcactaatgtcttgaatgcacgaatatgtaatctccatattgcaaggaatccgtccaaatt |
29008150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 62 - 397
Target Start/End: Complemental strand, 21461702 - 21461363
Alignment:
| Q |
62 |
ttttcccaccattatcacatcatgttttatatc---aatatctttctcatttcgttattttcgtaacctagactctgagaacgaaaactatcatgtaatg |
158 |
Q |
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| T |
21461702 |
tttttccaccattatcacatcatgttttatatcgtcaatatctttctcatttcgttattttcataacctagactccaagaacgaaaactaccacgtaatg |
21461603 |
T |
|
| Q |
159 |
cataagaga-taatagatggaccgacttccttggattcacgagtcccacattcacacatttgaaaaccagtgaccttatggtttatattgaaccgcccaa |
257 |
Q |
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||| | ||| ||||||||||||| || |||||| |||||||||||| ||||||||||||||||||||||||||| | ||||||| |||| || | ||| |
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| T |
21461602 |
catgaaagaataatagatggaccaacgtccttgcattcacgagtcctacattcacacatttgaaaaccagtgacagtttggtttagattggactgttcaa |
21461503 |
T |
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| Q |
258 |
attcaaattctgtatttggaattatacaatgaaaattgaattttcattcatttgaacagttccattgaaattttgacggtcactaatgtcttgaatgcac |
357 |
Q |
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| T |
21461502 |
attcaaattctgtatttgaaattatacaatgaaaattgaattttcagtctttcgaacggtttgattgaaattttaacgatcgctaatgtctcgaatgcat |
21461403 |
T |
|
| Q |
358 |
gaatatgtaatctccttattgcaaggaatccgtccaaatt |
397 |
Q |
| |
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|| | |||||||||||||||||||||||||| |||||||| |
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| T |
21461402 |
gattgtgtaatctccttattgcaaggaatccatccaaatt |
21461363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 8 - 339
Target Start/End: Complemental strand, 21409459 - 21409120
Alignment:
| Q |
8 |
tcgaaaaatacactttacattgttcccacctcttatttt--gagtttttt-ctctgcttttc-ccaccattatcacatcatgttttata---tcaatatc |
100 |
Q |
| |
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|||||||||||||||||| ||||||| || |||||||| ||||||||| ||||| |||| |||||||||||||||||||||||||| |||||||| |
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| T |
21409459 |
tcgaaaaatacactttactttgttcctgccacttattttttgagtttttttctctgtttttttccaccattatcacatcatgttttataccgtcaatatc |
21409360 |
T |
|
| Q |
101 |
tttctcatttcgttattttcgtaacctagactctgagaacgaaaactatcatgtaatgcataagaga-taatagatggaccgacttccttggattcacga |
199 |
Q |
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| T |
21409359 |
tttctcatctcgttattttcataacctagactccaagaacgaaaactaccacgtaatgcataaaagaataatagatggaccgacgtccttgcattcacga |
21409260 |
T |
|
| Q |
200 |
gtcccacattcacacatttgaaaaccagtgaccttatggtttatattgaaccgcccaaattcaaattctgtatttggaattatacaatgaaaattgaatt |
299 |
Q |
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||| |||||||||||||||||||| |||||| | ||||||| |||| || | ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21409259 |
gtcgtacattcacacatttgaaaacgagtgacagtttggtttagattggactgttcaaattcaaattctgtatttggaattatacattgaaaattgaatt |
21409160 |
T |
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| Q |
300 |
ttcattcatttgaacagttccattgaaattttgacggtca |
339 |
Q |
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|||| || ||||||| ||| ||||||||||| ||||||| |
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| T |
21409159 |
ttcagtcttttgaacggtttgattgaaattttaacggtca |
21409120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 397
Target Start/End: Complemental strand, 21409095 - 21409049
Alignment:
| Q |
351 |
aatgcacgaatatgtaatctccttattgcaaggaatccgtccaaatt |
397 |
Q |
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||||||||| | | |||||||||||||||||||||||| |||||||| |
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| T |
21409095 |
aatgcacgattgtataatctccttattgcaaggaatccatccaaatt |
21409049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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