View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12548_high_5 (Length: 373)
Name: NF12548_high_5
Description: NF12548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12548_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 4159645 - 4159994
Alignment:
| Q |
1 |
aatattatccacaatcatggcaaaccaattactctttccaacttagtttcaattcttcaaattccatcaaccaaagtcgataacgtgcagcgtctcatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4159645 |
aatattatccacaatcatggcaaaccaattactctttcaaacttagtttcaattcttcaaattccatcaaccaaagtcgataacgtgcagcgtctcatgc |
4159744 |
T |
|
| Q |
101 |
gttacctcgcacacaatggattctttgagataattacaaatcaagaattagaaaatgaagaagaagcttatgctctcactgttgcttcagagcttcttgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4159745 |
gttacctcgcacacaatggattctttgagataattacaaatcaagaattagaaaatgaagaagaagcttatgctctcactgttgcttcagagcttcttgt |
4159844 |
T |
|
| Q |
201 |
taaaggaactgaactttgtttagctccaatggttgagtgtgttcttgatccaacactttcagcttcatttcataagttaaagaaatgggtttatgaggaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4159845 |
taaaggaactgaactttgtttagctccaatggttgagtgtgttcttgatccaacactttcaacttcatttcataacttaaagaaatgggtttatgaggaa |
4159944 |
T |
|
| Q |
301 |
gatctcactctatttactgtcaatttaggttgtgatttatgggagtttct |
350 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4159945 |
gatctcactctatttgctgtcaatttaggttgtgatttatgggagtttct |
4159994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 3 - 350
Target Start/End: Complemental strand, 4172355 - 4172008
Alignment:
| Q |
3 |
tattatccacaatcatggcaaaccaattactctttccaacttagtttcaattcttcaaattccatcaaccaaagtcgataacgtgcagcgtctcatgcgt |
102 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4172355 |
tattatctacaatcatggcaaaccaattactctttcaaacttagtttcaattcttcaaattccatcaaccaaagtcgataacgtgcagcgtctcatgcgt |
4172256 |
T |
|
| Q |
103 |
tacctcgcacacaatggattctttgagataattacaaatcaagaattagaaaatgaagaagaagcttatgctctcactgttgcttcagagcttcttgtta |
202 |
Q |
| |
|
||| |||||||||||||||||||||||| | || ||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
4172255 |
ctccttgcacacaatggattctttgagatagtaacgaatcaagaattggaaaatgaagaagaagcttatgctctcacagttacttcagagcttcttgtta |
4172156 |
T |
|
| Q |
203 |
aaggaactgaactttgtttagctccaatggttgagtgtgttcttgatccaacactttcagcttcatttcataagttaaagaaatgggtttatgaggaaga |
302 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| | | || | |||||||||||| || ||||| ||| ||||||||||||| |
|
|
| T |
4172155 |
aagggactgaactttgtttagctccaatggttgagtgtgttcttgatcctaaatttaatgtttcatttcataatttcaagaagtggatttatgaggaaga |
4172056 |
T |
|
| Q |
303 |
tctcactctatttactgtcaatttaggttgtgatttatgggagtttct |
350 |
Q |
| |
|
|||||| || ||| || | |||||| |||||||||||||||||||| |
|
|
| T |
4172055 |
tctcaccctctttgctacctctttaggatgtgatttatgggagtttct |
4172008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 4177965 - 4177676
Alignment:
| Q |
1 |
aatattatccacaatcatggcaaaccaattactctttccaacttagtttcaattcttcaaattccatcaaccaaagtcgataacgtgcagcgtctcatgc |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | ||||| || |||||||||||||||||| ||||||| | ||| | | |||||||| ||||||||||| |
|
|
| T |
4177965 |
aatattattcacaatcatggcaaaccaatttcactttcaaatttagtttcaattcttcaagttccatcgtcgaaaataggtaacgtgcggcgtctcatgc |
4177866 |
T |
|
| Q |
101 |
gttacctcgcacacaatggattctttgagataattacaaatcaagaattagaaaatgaagaagaagcttatgctctcactgttgcttcagagcttcttgt |
200 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4177865 |
gttacctcgcgcacaacggattctttgagataattacaaaa---------------gaagaagagtcttatgctctcactgttgcttcagagcttcttgt |
4177781 |
T |
|
| Q |
201 |
taaaggaactgaactttgtttagctccaatggttgagtgtgttcttgatccaacactttcagcttcatttcataagttaaagaaatgggtttatgaggaa |
300 |
Q |
| |
|
|| ||| | ||| ||||||||||| ||||||||||||||||||||||||||||| ||||| | ||| | |||| || | ||||||||| ||||||||||| |
|
|
| T |
4177780 |
tagaggtagtgatctttgtttagcaccaatggttgagtgtgttcttgatccaactctttcgggttcgtatcatgagctgaagaaatggatttatgaggaa |
4177681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University