View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12548_high_6 (Length: 293)
Name: NF12548_high_6
Description: NF12548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12548_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 47 - 278
Target Start/End: Complemental strand, 455572 - 455340
Alignment:
| Q |
47 |
attatcttggaaaatatttattcaannnnnnnaaagtttaaaaattgttcttttcaatagaacattatgtccttaatgtccttaactagtgctcttcgtg |
146 |
Q |
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| T |
455572 |
attatcttgaaaaatatttattcaatttttttaaagtttaaaaattgttcttttcaatagaaaattatgtccttagtgtccttaactagtgctcttcgtg |
455473 |
T |
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| Q |
147 |
agca-taannnnnnnnaacaaattttcctactgacctaagaaatgtaaacaaaatatgtgctaattcaatatcataataaattggtcataatagtaaata |
245 |
Q |
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| T |
455472 |
agcaataattttttttaacaaattttcctactgacttaagaaatgtaaaaaaaatatgtgctaattcaatatcataataaattggtcataatagtaaatg |
455373 |
T |
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| Q |
246 |
ttactcattttactgtgtaaaacgaattatatc |
278 |
Q |
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| T |
455372 |
ttactcattttactgtgtaaaacgaattatatc |
455340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 458748 - 458703
Alignment:
| Q |
6 |
aggagcacagagtaagtaaacgatgtggccaatatagtaatattat |
51 |
Q |
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| T |
458748 |
aggagcacaaagtaagtaaaccatgtggctaatatagtaatattat |
458703 |
T |
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