View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12548_high_7 (Length: 279)
Name: NF12548_high_7
Description: NF12548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12548_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 40121362 - 40121609
Alignment:
| Q |
14 |
caaagggatcaatgaaaaatgaatacccttttgaatccaaatattcttggcttcactcagtaagaaagtcaccaacaaagacatggaataagaaggcacc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40121362 |
caaagggatcaatgaaaaatgaatacccttttgaatccaaatattcttgtcttcactcagtaagaaagtcaccaacaaagacatggaataagaaggcacc |
40121461 |
T |
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| Q |
114 |
aatagcaccaatggcaccaacacctatcaaagtatacaaagtggatcctataaacttcaaagaacttgttcagtccctcacttgtgcacctcagttcatg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40121462 |
aatagcaccaatggcaccaacacctatcaaagtatacaaagtggatccaataaacttcaaagaacttgttcagtccctcacttgtgcacctcagttcatg |
40121561 |
T |
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| Q |
214 |
cctccacagcctcatcacaaccttgaccttcaaagcaccacaaaccat |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40121562 |
cctccacagcctcatcacaaccttgaccttcaaagcaccacagaccat |
40121609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 40092536 - 40092786
Alignment:
| Q |
11 |
aagcaaagggatcaatgaaaaatgaatacccttttgaatccaaatattcttggcttcactcagtaagaaagtcaccaacaaagacatggaataagaaggc |
110 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40092536 |
aagcaaatggatcaatgaaaaatgaatacccttttgaatccaaatattcttggcttcactcagtaagaaagtcaccaacaaagacatggaataagaaggc |
40092635 |
T |
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| Q |
111 |
accaatagcaccaatggcaccaacacctatcaaagtatacaaagtggatcctataaacttcaaagaacttgttcagtccctcacttgtgcacctcagttc |
210 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40092636 |
accaatagcaccaatggcaccaacacctgccaaagtatacaaagtggatccaataaacttcaaagaacttgttcagtccctcacttgtgcacctcagttc |
40092735 |
T |
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| Q |
211 |
atgcctccacagcctcatcacaaccttgaccttcaaagcaccacaaaccat |
261 |
Q |
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|| ||| |||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
40092736 |
ataccttcacagcctcatcacaaacttgatcttcaaagcaccacaaaccat |
40092786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 40125011 - 40125258
Alignment:
| Q |
14 |
caaagggatcaatgaaaaatgaatacccttttgaatccaaatattcttggcttcactcagtaagaaagtcaccaacaaagacatggaataagaaggcacc |
113 |
Q |
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|||| |||||||| ||| |||||| ||||| | || | | |||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| |
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| T |
40125011 |
caaatggatcaattaaacatgaatgcccttgtcaaactcattattcttggcttcactcagtaagaaaatcacctgtaaagacatggaataagaagttacc |
40125110 |
T |
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| Q |
114 |
aatagcaccaatggcaccaacacctatcaaagtatacaaagtggatcctataaacttcaaagaacttgttcagtccctcacttgtgcacctcagttcatg |
213 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40125111 |
aatagcaccaatggcaccaacacctgccaaagtatacaaagtggatccaataaacttcaaagaacttgttcagtccctcacttgtgcacctcagttcata |
40125210 |
T |
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| Q |
214 |
cctccacagcctcatcacaaccttgaccttcaaagcaccacaaaccat |
261 |
Q |
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||| |||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
40125211 |
ccttcacagcctcatcacaaacttgatcttcaaagcaccacaaaccat |
40125258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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