View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12548_low_12 (Length: 221)
Name: NF12548_low_12
Description: NF12548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12548_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 62 - 208
Target Start/End: Complemental strand, 11230490 - 11230344
Alignment:
| Q |
62 |
ttattcacgcaccaagtccaagtttcgaaccaagcatgttggaaaagcattgtccatttatttttctgataatttcaacaaaacaaggtcatgtatggat |
161 |
Q |
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| T |
11230490 |
ttattcacgcaccaagtccaagtttcgaaccaagcatgttggaaaagcattatccatttatttttctgataatttcaacaaaacaaggtcatgtatggat |
11230391 |
T |
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| Q |
162 |
tcctatatccaacggtggttgcttaggagtgattccccgtctctgct |
208 |
Q |
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| T |
11230390 |
tcctatatccaacgatggttgcttaggagtgattccccgtctctgct |
11230344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 11230946 - 11230899
Alignment:
| Q |
18 |
agtcttagaccaacatacaatgtatgtttgtgtgattgttgctgttat |
65 |
Q |
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| T |
11230946 |
agtcttagaccaacatacaatgtatgtttgtgtgattgttgctgttat |
11230899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 11243133 - 11243086
Alignment:
| Q |
18 |
agtcttagaccaacatacaatgtatgtttgtgtgattgttgctgttat |
65 |
Q |
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| T |
11243133 |
agtctcagaccaacatacaatgtatctttgtgtgattggtgctgttat |
11243086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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